myRT

myRT report for GCA_000214095.3_ASM21409v3

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Seq: CP002985.1 Acidithiobacillus ferrivorans SS3, complete genome (3207552 bp)
Overview 1 RT 1: 971161-975536 bp 2 RT 2: 2277493-2281957 bp 3 RT 3: 2307439-2315224 bp 4 RT 4: 3150702-3158244 bp Neighborhood of RT #1 [971161, 975553] HTH_Tnp_1 HTH_Tnp_1 HTH_32 Tra5 RVT-GII GIIM HicB Neighborhood of RT #2 [2277493, 2281980] HTH_36 RVT-GII GIIM InsE PHA02517 Neighborhood of RT #3 [2307439, 2315640] HEPN_Toprim_N RVT-GII GIIM N6_Mtase TaqI_C Neighborhood of RT #4 [3150702, 3158258] COG3436 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM HNHc glyco_glyco_glyco_TIGR04182 GalE Feature: gene Location: 971161-971661 bp Ori: AEM47118.1 Feature: domain Description: HTH_Tnp_1 Location: 971167-971326 bp Feature: domain Description: HTH_Tnp_1 Location: 971 1 67-971 326 bp Feature: domain Description: HTH_Tnp_1 Location: 971344-971566 bp Feature: domain Description: HTH_Tnp_1 Location: 971 344-971 566 bp Feature: gene Location: 971685-972707 bp Ori: AEM47119.1 Feature: domain Description: HTH_32 Location: 971766-971991 bp Feature: domain Description: HTH_32 Location: 971 766-971 991 bp Feature: domain Description: Tra5 Location: 972027-972570 bp Feature: domain Description: Tra5 Location: 972027-972570 bp Feature: gene Location: 973206-974546 bp Ori: AEM47120.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973515-974133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97351 5-9741 33 bp Feature: domain Description: GIIM Note: maturase Location: 974181-974406 bp Feature: domain Description: GIIM Note: maturase Location: 9741 81 -974406 bp Feature: gene Location: 974655-975266 bp Feature: gene Location: 975344-975553 bp Ori: AEM47122.1 Feature: domain Description: HicB Location: 975347-975536 bp Feature: domain Description: HicB Location: 975347-975536 bp Feature: gene Location: 2277493-2278164 bp Feature: gene Location: 2278161-2278955 bp Ori: AEM48409.1 Feature: domain Description: HTH_36 Location: 2278209-2278347 bp Feature: domain Description: HTH_36 Location: 2278209-2278347 bp Feature: gene Location: 2279513-2280739 bp Ori: AEM48410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279864-2280485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279864-2280485 bp Feature: domain Description: GIIM Note: maturase Location: 2280533-2280704 bp Feature: domain Description: GIIM Note: maturase Location: 2280533-2280704 bp Feature: gene Location: 2280752-2281075 bp Ori: AEM48411.1 Feature: domain Description: InsE Location: 2280761-2281064 bp Feature: domain Description: InsE Location: 2280761 -2281 064 bp Feature: gene Location: 2281072-2281980 bp Ori: AEM48412.1 Feature: domain Description: PHA02517 Location: 2281135-2281957 bp Feature: domain Description: PHA0251 7 Location: 2281 1 35-2281 957 bp Feature: gene Location: 2307439-2308713 bp Feature: gene Location: 2308847-2310154 bp Ori: AEM48431.1 Feature: domain Description: HEPN_Toprim_N Location: 2308850-2309498 bp Feature: domain Description: HEPN_Toprim_N Location: 2308850-2309498 bp Feature: gene Location: 2310449-2311774 bp Ori: AEM48432.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2310737-2311397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 0737-231 1 397 bp Feature: domain Description: GIIM Note: maturase Location: 2311469-2311676 bp Feature: domain Description: GIIM Note: maturase Location: 231 1 469-231 1 676 bp Feature: gene Location: 2312603-2313124 bp Feature: gene Location: 2313121-2315640 bp Ori: AEM48434.1 Feature: domain Description: N6_Mtase Location: 2313925-2314369 bp Feature: domain Description: N6_Mtase Location: 231 3925-231 4369 bp Feature: domain Description: TaqI_C Location: 2314960-2315224 bp Feature: domain Description: TaqI_C Location: 231 4960-231 5224 bp Feature: gene Location: 3150702-3151892 bp Ori: AEM49283.1 Feature: domain Description: COG3436 Location: 3151014-3151227 bp Feature: domain Description: COG3436 Location: 31 51 01 4-31 51 227 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3151227-3151734 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 51 227-31 51 734 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3151755-3151866 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 51 755-31 51 866 bp Feature: gene Location: 3151968-3152321 bp Feature: gene Location: 3152957-3154648 bp Ori: AEM49285.1 Feature: domain Description: RVT_N Location: 3153005-3153248 bp Feature: domain Description: RVT_N Location: 31 53005-31 53248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3153293-3153929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 53293-31 53929 bp Feature: domain Description: GIIM Note: maturase Location: 3154001-3154229 bp Feature: domain Description: GIIM Note: maturase Location: 31 54001 -31 54229 bp Feature: domain Description: HNHc Note: nucleases Location: 3154439-3154601 bp Feature: domain Description: HNHc Note: nucleases Location: 31 54439-31 54601 bp Feature: gene Location: 3156018-3157154 bp Ori: AEM49286.1 Feature: domain Description: glyco_glyco_glyco_TIGR04182 Location: 3156021-3156858 bp Feature: domain Description: glyco_glyco_glyco_TIGR041 82 Location: 31 56021 -31 56858 bp Feature: gene Location: 3157278-3158258 bp Ori: AEM49287.1 Feature: domain Description: GalE Location: 3157281-3158244 bp Feature: domain Description: GalE Location: 31 57281 -31 58244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), HicB (pfam05534), HTH_36 (pfam13730), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HEPN_Toprim_N (pfam18871)
N6_Mtase (pfam02384), TaqI_C (pfam12950), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), HNHc (smart00507), glyco_glyco_glyco_TIGR04182, GalE (COG1087)