myRT

myRT report for GCA_000214665.1_ASM21466v1

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Seq: CP002738.1 Methylomonas methanica MC09, complete genome (5051681 bp)
Overview 1 RT 1: 342432-349572 bp 2 RT 2: 550054-554184 bp 3 RT 3: 644270-648841 bp 4 RT 4: 1365636-1375806 bp 5 RT 5: 2743149-2748757 bp 6 RT 6: 3556959-3559560 bp 7 RT 7: 3784931-3793041 bp 8 RT 8: 3948941-3955644 bp 9 RT 9: 3992788-4001921 bp 10 RT 10: 4776030-4782928 bp Neighborhood of RT #1 [342432, 349658] DUF2949 PulE HDOD RVT-GII HTH_23 Tra5 HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #2 [550054, 554360] InsE PHA02517 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 Neighborhood of RT #3 [644270, 648858] bac_FRK RVT-GII RAYT HTH_23 Ub-RnfH Neighborhood of RT #4 [1365636, 1375817] RhsA RHS_repeat RHS_repeat RhsA RHS_repeat RhsA ParB RVT-GII GIIM RAYT HTH_23 UDP_GE_SDE_e Neighborhood of RT #5 [2743149, 2748804] RAYT RVT-GII GIIM PepSY_TM Neighborhood of RT #6 [3556959, 3559742] HTH_XRE RVT-Retrons VCBS Neighborhood of RT #7 [3784931, 3793448] RAYT HTH_23 RVT-GII RhsA RHS_repeat RHS_repeat RhsA RHS_repeat YD_repeat_2x RhsA Neighborhood of RT #8 [3948941, 3955652] HTH_1 PBP2_CrgA_like_2 RVT-GII GIIM PRK10590 Neighborhood of RT #9 [3992788, 4001941] OafA RVT-GII GIIM MFS_FucP_like PRK15098 Neighborhood of RT #10 [4776030, 4782948] AP2 AP2 PRK15000 RVT-GII GIIM Bro-N Feature: gene Location: 342432-344327 bp Ori: AEF98767.1 Feature: domain Description: DUF2949 Location: 342483-342636 bp Feature: domain Description: DUF2949 Location: 342483-342636 bp Feature: domain Description: PulE Location: 342735-344268 bp Feature: domain Description: PulE Location: 342735-344268 bp Feature: gene Location: 344296-345180 bp Ori: AEF98768.1 Feature: domain Description: HDOD Location: 344407-344980 bp Feature: domain Description: HDOD Location: 344407-344980 bp Feature: gene Location: 346046-346996 bp Ori: AEF98769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346268-346886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346268-346886 bp Feature: gene Location: 347019-348101 bp Ori: AEF98770.1 Feature: domain Description: HTH_23 Location: 347025-347145 bp Feature: domain Description: HTH_23 Location: 347025-3471 45 bp Feature: domain Description: Tra5 Location: 347337-347925 bp Feature: domain Description: Tra5 Location: 347337-347925 bp Feature: gene Location: 349158-349658 bp Ori: AEF98771.1 Feature: domain Description: HTH_Tnp_1 Location: 349173-349305 bp Feature: domain Description: HTH_Tnp_1 Location: 3491 73-349305 bp Feature: domain Description: HTH_Tnp_1 Location: 349341-349572 bp Feature: domain Description: HTH_Tnp_1 Location: 349341 -349572 bp Feature: gene Location: 550054-550317 bp Ori: AEF98959.1 Feature: domain Description: InsE Location: 550066-550318 bp Feature: domain Description: InsE Location: 550066-55031 8 bp Feature: gene Location: 550317-551237 bp Ori: AEF98959.1 Feature: domain Description: PHA02517 Location: 550419-551199 bp Feature: domain Description: PHA0251 7 Location: 55041 9-551 1 99 bp Feature: gene Location: 551355-552653 bp Ori: AEF98960.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551577-552195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 577-5521 95 bp Feature: domain Description: GIIM Note: maturase Location: 552240-552450 bp Feature: domain Description: GIIM Note: maturase Location: 552240-552450 bp Feature: gene Location: 552781-553281 bp Ori: AEF98961.1 Feature: domain Description: HTH_Tnp_1 Location: 552796-552928 bp Feature: domain Description: HTH_Tnp_1 Location: 552796-552928 bp Feature: domain Description: HTH_Tnp_1 Location: 552964-553195 bp Feature: domain Description: HTH_Tnp_1 Location: 552964-5531 95 bp Feature: gene Location: 553278-554360 bp Ori: AEF98962.1 Feature: domain Description: HTH_23 Location: 553284-553404 bp Feature: domain Description: HTH_23 Location: 553284-553404 bp Feature: domain Description: Tra5 Location: 553602-554184 bp Feature: domain Description: Tra5 Location: 553602-5541 84 bp Feature: gene Location: 644270-645154 bp Ori: AEF99037.1 Feature: domain Description: bac_FRK Location: 644294-645101 bp Feature: domain Description: bac_FRK Location: 644294-6451 01 bp Feature: gene Location: 645275-645487 bp Feature: gene Location: 646234-647550 bp Ori: AEF99039.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 646492-647182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 646492-6471 82 bp Feature: gene Location: 647660-648511 bp Ori: AEF99040.1 Feature: domain Description: RAYT Location: 647687-648077 bp Feature: domain Description: RAYT Location: 647687-648077 bp Feature: domain Description: HTH_23 Location: 648413-648491 bp Feature: domain Description: HTH_23 Location: 64841 3-648491 bp Feature: gene Location: 648577-648858 bp Ori: AEF99041.1 Feature: domain Description: Ub-RnfH Location: 648595-648841 bp Feature: domain Description: Ub-RnfH Location: 648595-648841 bp Feature: gene Location: 1365636-1370036 bp Ori: AEF99689.1 Feature: domain Description: RhsA Location: 1366128-1367586 bp Feature: domain Description: RhsA Location: 1 3661 28-1 367586 bp Feature: domain Description: RHS_repeat Location: 1367604-1367706 bp Feature: domain Description: RHS_repeat Location: 1 367604-1 367706 bp Feature: domain Description: RHS_repeat Location: 1367727-1367841 bp Feature: domain Description: RHS_repeat Location: 1 367727-1 367841 bp Feature: domain Description: RhsA Location: 1367850-1368126 bp Feature: domain Description: RhsA Location: 1 367850-1 3681 26 bp Feature: domain Description: RHS_repeat Location: 1368183-1368291 bp Feature: domain Description: RHS_repeat Location: 1 3681 83-1 368291 bp Feature: domain Description: RhsA Location: 1369107-1369617 bp Feature: domain Description: RhsA Location: 1 3691 07-1 36961 7 bp Feature: domain Description: ParB Location: 1369854-1370031 bp Feature: domain Description: ParB Location: 1 369854-1 370031 bp Feature: gene Location: 1370041-1370364 bp Feature: gene Location: 1371405-1372703 bp Ori: AEF99691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371627-1372245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 627-1 372245 bp Feature: domain Description: GIIM Note: maturase Location: 1372290-1372500 bp Feature: domain Description: GIIM Note: maturase Location: 1 372290-1 372500 bp Feature: gene Location: 1373157-1374008 bp Ori: AEF99692.1 Feature: domain Description: RAYT Location: 1373184-1373574 bp Feature: domain Description: RAYT Location: 1 3731 84-1 373574 bp Feature: domain Description: HTH_23 Location: 1373910-1373988 bp Feature: domain Description: HTH_23 Location: 1 37391 0-1 373988 bp Feature: gene Location: 1374810-1375817 bp Ori: AEF99693.1 Feature: domain Description: UDP_GE_SDE_e Location: 1374813-1375806 bp Feature: domain Description: UDP_GE_SDE_e Location: 1 37481 3-1 375806 bp Feature: gene Location: 2743149-2743775 bp Feature: gene Location: 2743901-2744425 bp Ori: AEG00886.1 Feature: domain Description: RAYT Location: 2743904-2744345 bp Feature: domain Description: RAYT Location: 2743904-2744345 bp Feature: gene Location: 2744504-2745802 bp Ori: AEG00887.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2744726-2745344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2744726-2745344 bp Feature: domain Description: GIIM Note: maturase Location: 2745389-2745599 bp Feature: domain Description: GIIM Note: maturase Location: 2745389-2745599 bp Feature: gene Location: 2746566-2747180 bp Feature: gene Location: 2747644-2748804 bp Ori: AEG00889.1 Feature: domain Description: PepSY_TM Location: 2747695-2748757 bp Feature: domain Description: PepSY_TM Location: 2747695-2748757 bp Feature: gene Location: 3556959-3557189 bp Feature: gene Location: 3557230-3557535 bp Ori: AEG01599.1 Feature: domain Description: HTH_XRE Location: 3557245-3557407 bp Feature: domain Description: HTH_XRE Location: 3557245-3557407 bp Feature: gene Location: 3557507-3558508 bp Ori: AEG01600.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3557648-3558215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3557648-355821 5 bp Feature: gene Location: 3558827-3559126 bp Feature: gene Location: 3559242-3559742 bp Ori: AEG01602.1 Feature: domain Description: VCBS Location: 3559458-3559560 bp Feature: domain Description: VCBS Location: 3559458-3559560 bp Feature: gene Location: 3784931-3785155 bp Feature: gene Location: 3785428-3786291 bp Ori: AEG01799.1 Feature: domain Description: RAYT Location: 3785455-3785845 bp Feature: domain Description: RAYT Location: 3785455-3785845 bp Feature: domain Description: HTH_23 Location: 3786175-3786259 bp Feature: domain Description: HTH_23 Location: 37861 75-3786259 bp Feature: gene Location: 3786401-3787717 bp Ori: AEG01800.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786659-3787349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786659-3787349 bp Feature: gene Location: 3788672-3788950 bp Feature: gene Location: 3788964-3793448 bp Ori: AEG01802.1 Feature: domain Description: RhsA Location: 3789813-3790983 bp Feature: domain Description: RhsA Location: 378981 3-3790983 bp Feature: domain Description: RHS_repeat Location: 3790998-3791100 bp Feature: domain Description: RHS_repeat Location: 3790998-3791 1 00 bp Feature: domain Description: RHS_repeat Location: 3791121-3791235 bp Feature: domain Description: RHS_repeat Location: 3791 1 21 -3791 235 bp Feature: domain Description: RhsA Location: 3791244-3791496 bp Feature: domain Description: RhsA Location: 3791 244-3791 496 bp Feature: domain Description: RHS_repeat Location: 3791514-3791619 bp Feature: domain Description: RHS_repeat Location: 3791 51 4-3791 61 9 bp Feature: domain Description: YD_repeat_2x Location: 3791742-3791838 bp Feature: domain Description: YD_repeat_2x Location: 3791 742-3791 838 bp Feature: domain Description: RhsA Location: 3792114-3793041 bp Feature: domain Description: RhsA Location: 37921 1 4-3793041 bp Feature: gene Location: 3948941-3949840 bp Ori: AEG01920.1 Feature: domain Description: HTH_1 Location: 3948953-3949130 bp Feature: domain Description: HTH_1 Location: 3948953-39491 30 bp Feature: domain Description: PBP2_CrgA_like_2 Location: 3949217-3949817 bp Feature: domain Description: PBP2_CrgA_like_2 Location: 394921 7-394981 7 bp Feature: gene Location: 3950098-3950925 bp Feature: gene Location: 3951741-3953039 bp Ori: AEG01922.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3951963-3952581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3951 963-3952581 bp Feature: domain Description: GIIM Note: maturase Location: 3952626-3952836 bp Feature: domain Description: GIIM Note: maturase Location: 3952626-3952836 bp Feature: gene Location: 3954006-3954296 bp Feature: gene Location: 3954513-3955652 bp Ori: AEG01924.1 Feature: domain Description: PRK10590 Location: 3954516-3955644 bp Feature: domain Description: PRK1 0590 Location: 395451 6-3955644 bp Feature: gene Location: 3992788-3993198 bp Feature: gene Location: 3993551-3995665 bp Ori: AEG01963.1 Feature: domain Description: OafA Location: 3993578-3994670 bp Feature: domain Description: OafA Location: 3993578-3994670 bp Feature: gene Location: 3996390-3997688 bp Ori: AEG01964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3996612-3997230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399661 2-3997230 bp Feature: domain Description: GIIM Note: maturase Location: 3997275-3997485 bp Feature: domain Description: GIIM Note: maturase Location: 3997275-3997485 bp Feature: gene Location: 3998419-3999678 bp Ori: AEG01965.1 Feature: domain Description: MFS_FucP_like Location: 3998458-3999649 bp Feature: domain Description: MFS_FucP_like Location: 3998458-3999649 bp Feature: gene Location: 3999692-4001941 bp Ori: AEG01966.1 Feature: domain Description: PRK15098 Location: 3999758-4001921 bp Feature: domain Description: PRK1 5098 Location: 3999758-4001 921 bp Feature: gene Location: 4776030-4776542 bp Ori: AEG02690.1 Feature: domain Description: AP2 Location: 4776090-4776186 bp Feature: domain Description: AP2 Location: 4776090-47761 86 bp Feature: domain Description: AP2 Location: 4776288-4776369 bp Feature: domain Description: AP2 Location: 4776288-4776369 bp Feature: gene Location: 4776784-4777386 bp Ori: AEG02691.1 Feature: domain Description: PRK15000 Location: 4776793-4777378 bp Feature: domain Description: PRK1 5000 Location: 4776793-4777378 bp Feature: gene Location: 4778392-4779690 bp Ori: AEG02692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4778614-4779232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477861 4-4779232 bp Feature: domain Description: GIIM Note: maturase Location: 4779277-4779487 bp Feature: domain Description: GIIM Note: maturase Location: 4779277-4779487 bp Feature: gene Location: 4780438-4781823 bp Feature: gene Location: 4782709-4782948 bp Ori: AEG02694.1 Feature: domain Description: Bro-N Location: 4782730-4782928 bp Feature: domain Description: Bro-N Location: 4782730-4782928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2949 (pfam11165), PulE (COG2804), HDOD (pfam08668), RVT-GII, HTH_23 (pfam13384), Tra5 (COG2801), HTH_Tnp_1 (pfam01527), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)
bac_FRK (cd01167), RAYT (COG1943), Ub-RnfH (pfam03658), RhsA (COG3209), RHS_repeat (pfam05593), ParB (smart00470), UDP_GE_SDE_e (cd05253), PepSY_TM (pfam03929), HTH_XRE (smart00530), RVT-Retrons
VCBS (pfam13517), YD_repeat_2x (TIGR01643), HTH_1 (pfam00126), PBP2_CrgA_like_2 (cd08471), PRK10590 (ATP-dependent RNA helicase RhlE; Provisional), OafA (COG1835), MFS_FucP_like (cd17394), PRK15098 (beta-glucosidase BglX), AP2 (smart00380), PRK15000 (peroxiredoxin C)
Bro-N (smart01040)