myRT

myRT report for GCA_000215895.1_ASM21589v1

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Seq: CP002814.1 Shewanella baltica OS117 plasmid pSBAL11703, complete sequence (71173 bp)
Overview 1 RT 1: 46308-53476 bp Neighborhood of RT #1 [46308, 53487] Avd_like RVT-DGRs BID_2 BID_2 BID_2 BID_2 BID_2 BID_2 BID_2 BID_2 BID_2 BID_2 DUF1566 Feature: gene Location: 46308-46934 bp Feature: gene Location: 47486-47854 bp Ori: AEH16449.1 Feature: domain Description: Avd_like Location: 47492-47795 bp Feature: domain Description: Avd_like Location: 47492-47795 bp Feature: gene Location: 47882-49186 bp Ori: AEH16450.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48086-48851 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48086-48851 bp Feature: gene Location: 49487-49945 bp Feature: gene Location: 50059-53487 bp Ori: AEH16452.1 Feature: domain Description: BID_2 Location: 50452-50683 bp Feature: domain Description: BID_2 Location: 50452-50683 bp Feature: domain Description: BID_2 Location: 50710-50941 bp Feature: domain Description: BID_2 Location: 5071 0-50941 bp Feature: domain Description: BID_2 Location: 50968-51199 bp Feature: domain Description: BID_2 Location: 50968-51 1 99 bp Feature: domain Description: BID_2 Location: 51229-51460 bp Feature: domain Description: BID_2 Location: 51 229-51 460 bp Feature: domain Description: BID_2 Location: 51490-51721 bp Feature: domain Description: BID_2 Location: 51 490-51 721 bp Feature: domain Description: BID_2 Location: 51751-51982 bp Feature: domain Description: BID_2 Location: 51 751 -51 982 bp Feature: domain Description: BID_2 Location: 52012-52243 bp Feature: domain Description: BID_2 Location: 5201 2-52243 bp Feature: domain Description: BID_2 Location: 52273-52504 bp Feature: domain Description: BID_2 Location: 52273-52504 bp Feature: domain Description: BID_2 Location: 52534-52765 bp Feature: domain Description: BID_2 Location: 52534-52765 bp Feature: domain Description: BID_2 Location: 52798-53029 bp Feature: domain Description: BID_2 Location: 52798-53029 bp Feature: domain Description: DUF1566 Location: 53209-53476 bp Feature: domain Description: DUF1 566 Location: 53209-53476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, BID_2 (smart00635), DUF1566 (pfam07603)

Seq: CP002811.1 Shewanella baltica OS117, complete genome (5242964 bp)
Overview 1 RT 1: 2237794-2243727 bp 2 RT 2: 2796770-2802393 bp 3 RT 3: 2900529-2907928 bp Neighborhood of RT #1 [2237794, 2243768] marine_sort_HK marine_sort_RR RVT-GII GIIM marine_sort_RR pdsO Neighborhood of RT #2 [2796770, 2802446] HTH_26 RVT_N RVT-GII GIIM Glyphos_transf G3P_Cytidylyltransferase Neighborhood of RT #3 [2900529, 2908356] DUF3144 RVT-GII GIIM RAYT RAYT Feature: gene Location: 2237794-2239962 bp Ori: AEH13696.1 Feature: domain Description: marine_sort_HK Location: 2237818-2239945 bp Feature: domain Description: marine_sort_HK Location: 2 2 37818-2 2 39945 bp Feature: gene Location: 2240037-2240720 bp Ori: AEH13697.1 Feature: domain Description: marine_sort_RR Location: 2240094-2240712 bp Feature: domain Description: marine_sort_RR Location: 2 2 40094-2 2 40712 bp Feature: gene Location: 2241181-2242527 bp Ori: AEH13698.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241463-2242081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 41463-2 2 42 081 bp Feature: domain Description: GIIM Note: maturase Location: 2242129-2242333 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 42 12 9-2 2 42 333 bp Feature: gene Location: 2242524-2242679 bp Ori: AEH13699.1 Feature: domain Description: marine_sort_RR Location: 2242530-2242596 bp Feature: domain Description: marine_sort_RR Location: 2 2 42 530-2 2 42 596 bp Feature: gene Location: 2242938-2243768 bp Ori: AEH13700.1 Feature: domain Description: pdsO Location: 2242947-2243727 bp Feature: domain Description: pdsO Location: 2 2 42 947-2 2 4372 7 bp Feature: gene Location: 2796770-2796985 bp Feature: gene Location: 2797113-2797322 bp Ori: AEH14161.1 Feature: domain Description: HTH_26 Location: 2797128-2797308 bp Feature: domain Description: HTH_2 6 Location: 2 79712 8-2 797308 bp Feature: gene Location: 2797581-2799053 bp Ori: AEH14162.1 Feature: domain Description: RVT_N Location: 2797629-2797872 bp Feature: domain Description: RVT_N Location: 2 79762 9-2 797872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2797917-2798544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 797917-2 798544 bp Feature: domain Description: GIIM Note: maturase Location: 2798601-2798829 bp Feature: domain Description: GIIM Note: maturase Location: 2 798601-2 79882 9 bp Feature: gene Location: 2800759-2802006 bp Ori: AEH14163.1 Feature: domain Description: Glyphos_transf Location: 2800807-2801869 bp Feature: domain Description: Glyphos_transf Location: 2 800807-2 801869 bp Feature: gene Location: 2802015-2802446 bp Ori: AEH14164.1 Feature: domain Description: G3P_Cytidylyltransferase Location: 2802018-2802393 bp Feature: domain Description: G3P_Cytidylyltransferase Location: 2 802 018-2 802 393 bp Feature: gene Location: 2900529-2902772 bp Feature: gene Location: 2903665-2903955 bp Ori: AEH14253.1 Feature: domain Description: DUF3144 Location: 2903695-2903923 bp Feature: domain Description: DUF3144 Location: 2 903695-2 90392 3 bp Feature: gene Location: 2904065-2905411 bp Ori: AEH14254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2904347-2904965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 904347-2 904965 bp Feature: domain Description: GIIM Note: maturase Location: 2905013-2905217 bp Feature: domain Description: GIIM Note: maturase Location: 2 905013-2 9052 17 bp Feature: gene Location: 2906398-2907174 bp Feature: gene Location: 2907331-2908356 bp Ori: AEH14256.1 Feature: domain Description: RAYT Location: 2907382-2907586 bp Feature: domain Description: RAYT Location: 2 907382 -2 907586 bp Feature: domain Description: RAYT Location: 2907742-2907928 bp Feature: domain Description: RAYT Location: 2 907742 -2 90792 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT marine_sort_HK (TIGR03785), marine_sort_RR (TIGR03787), RVT-GII, GIIM (pfam08388), pdsO (TIGR03789), HTH_26 (pfam13443), RVT_N (pfam13655), Glyphos_transf (pfam04464), G3P_Cytidylyltransferase (cd02171), DUF3144 (pfam11342)
RAYT (COG1943)