myRT

myRT report for GCA_000218265.1_ASM21826v1

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Seq: CP001830.1 Sinorhizobium meliloti SM11, complete genome (3908022 bp)
Overview 1 RT 1: 314048-319460 bp 2 RT 2: 3043921-3048721 bp 3 RT 3: 3676138-3681298 bp Neighborhood of RT #1 [314048, 319498] PRK12687 PRK12687 PRK12687 PRK12687 RVT-GII GIIM PRK12687 Neighborhood of RT #2 [3043921, 3048723] YceA COG3335 RVT-GII GIIM COG3415 NlpA Neighborhood of RT #3 [3676138, 3681306] InsG COG3415 RVT-GII GIIM COG3335 TadD Feature: gene Location: 314048-315235 bp Ori: AEH77588.1 Gene: flaA Feature: domain Description: PRK12687 Location: 314051-314636 bp Feature: domain Description: PRK1 2687 Location: 31 4051 -31 4636 bp Feature: domain Description: PRK12687 Location: 314903-315233 bp Feature: domain Description: PRK1 2687 Location: 31 4903-31 5233 bp Feature: gene Location: 315579-316766 bp Ori: AEH77589.1 Gene: flaB Feature: domain Description: PRK12687 Location: 315582-316179 bp Feature: domain Description: PRK1 2687 Location: 31 5582-31 61 79 bp Feature: domain Description: PRK12687 Location: 316434-316764 bp Feature: domain Description: PRK1 2687 Location: 31 6434-31 6764 bp Feature: gene Location: 317244-318122 bp Ori: AEH77590.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317571-318078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 7571 -31 8078 bp Feature: gene Location: 318155-318604 bp Ori: AEH77591.1 Feature: domain Description: GIIM Note: maturase Location: 318239-318455 bp Feature: domain Description: GIIM Note: maturase Location: 31 8239-31 8455 bp Feature: gene Location: 318863-319498 bp Ori: AEH77592.1 Gene: flaD1 Feature: domain Description: PRK12687 Location: 318866-319460 bp Feature: domain Description: PRK1 2687 Location: 31 8866-31 9460 bp Feature: gene Location: 3043921-3044868 bp Ori: AEH80300.1 Feature: domain Description: YceA Location: 3043969-3044854 bp Feature: domain Description: YceA Location: 3043969-3044854 bp Feature: gene Location: 3044881-3045396 bp Ori: AEH80301.1 Feature: domain Description: COG3335 Location: 3045001-3045385 bp Feature: domain Description: COG3335 Location: 3045001 -3045385 bp Feature: gene Location: 3045450-3046709 bp Ori: AEH80302.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3045666-3046320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3045666-3046320 bp Feature: domain Description: GIIM Note: maturase Location: 3046401-3046623 bp Feature: domain Description: GIIM Note: maturase Location: 3046401 -3046623 bp Feature: gene Location: 3047304-3047711 bp Ori: AEH80303.1 Feature: domain Description: COG3415 Location: 3047307-3047709 bp Feature: domain Description: COG341 5 Location: 3047307-3047709 bp Feature: gene Location: 3047947-3048723 bp Ori: AEH80304.1 Gene: metQ Feature: domain Description: NlpA Location: 3047959-3048721 bp Feature: domain Description: NlpA Location: 3047959-3048721 bp Feature: gene Location: 3676138-3677301 bp Ori: AEH80847.1 Feature: domain Description: InsG Location: 3676204-3677242 bp Feature: domain Description: InsG Location: 3676204-3677242 bp Feature: gene Location: 3677468-3677875 bp Ori: AEH80848.1 Feature: domain Description: COG3415 Location: 3677471-3677873 bp Feature: domain Description: COG341 5 Location: 3677471 -3677873 bp Feature: gene Location: 3678470-3679729 bp Ori: AEH80849.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3678686-3679340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3678686-3679340 bp Feature: domain Description: GIIM Note: maturase Location: 3679421-3679643 bp Feature: domain Description: GIIM Note: maturase Location: 3679421 -3679643 bp Feature: gene Location: 3679783-3680298 bp Ori: AEH80850.1 Feature: domain Description: COG3335 Location: 3679903-3680287 bp Feature: domain Description: COG3335 Location: 3679903-3680287 bp Feature: gene Location: 3680497-3681306 bp Ori: AEH80851.1 Feature: domain Description: TadD Location: 3680536-3681298 bp Feature: domain Description: TadD Location: 3680536-3681 298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12687 (flagellin; Reviewed), RVT-GII, GIIM (pfam08388), YceA (COG1054), COG3335 (Transposase ), COG3415 (Transposase ), NlpA (COG1464), InsG (COG3385), TadD (COG5010)

Seq: CP001832.1 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence (1632395 bp)
Overview 1 RT 1: 336907-340065 bp 2 RT 2: 806384-812537 bp 3 RT 3: 953398-957591 bp Neighborhood of RT #1 [336907, 340154] DUF982 RVT-GII GIIM MazF MazF Neighborhood of RT #2 [806384, 812548] HTH_ARSR AraJ RVT-GII GIIM PRK09356 hutH Neighborhood of RT #3 [953398, 957599] KOG1232 COG3335 RVT-GII GIIM COG3415 COG5654 Feature: gene Location: 336907-337167 bp Ori: AEH83145.1 Feature: domain Description: DUF982 Location: 336940-337147 bp Feature: domain Description: DUF982 Location: 336940-337147 bp Feature: gene Location: 337211-337513 bp Feature: gene Location: 338293-339651 bp Ori: AEH83147.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338617-339232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338617-3392 32 bp Feature: domain Description: GIIM Note: maturase Location: 339286-339502 bp Feature: domain Description: GIIM Note: maturase Location: 3392 86-339502 bp Feature: gene Location: 339604-339951 bp Ori: AEH83148.1 Feature: domain Description: MazF Location: 339607-339940 bp Feature: domain Description: MazF Location: 339607-339940 bp Feature: gene Location: 339951-340154 bp Ori: AEH83149.1 Feature: domain Description: MazF Location: 339954-340065 bp Feature: domain Description: MazF Location: 339954-340065 bp Feature: gene Location: 806384-806782 bp Ori: AEH83591.1 Feature: domain Description: HTH_ARSR Location: 806468-806666 bp Feature: domain Description: HTH_ARSR Location: 806468-806666 bp Feature: gene Location: 806845-808029 bp Ori: AEH83592.1 Feature: domain Description: AraJ Location: 806848-808006 bp Feature: domain Description: AraJ Location: 806848-808006 bp Feature: gene Location: 808205-809566 bp Ori: AEH83593.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808532-809147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808532 -809147 bp Feature: domain Description: GIIM Note: maturase Location: 809201-809417 bp Feature: domain Description: GIIM Note: maturase Location: 8092 01-809417 bp Feature: gene Location: 809538-811016 bp Ori: AEH83594.1 Gene: hutI Feature: domain Description: PRK09356 Location: 809805-811008 bp Feature: domain Description: PRK09356 Location: 809805-811008 bp Feature: gene Location: 811013-812548 bp Ori: AEH83595.1 Gene: hutH1 Feature: domain Description: hutH Location: 811022-812537 bp Feature: domain Description: hutH Location: 81102 2 -812 537 bp Feature: gene Location: 953398-954306 bp Ori: AEH83713.1 Feature: domain Description: KOG1232 Location: 953413-954295 bp Feature: domain Description: KOG12 32 Location: 953413-9542 95 bp Feature: gene Location: 954391-954906 bp Ori: AEH83714.1 Feature: domain Description: COG3335 Location: 954511-954895 bp Feature: domain Description: COG3335 Location: 954511-954895 bp Feature: gene Location: 954960-956219 bp Ori: AEH83715.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955176-955830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955176-955830 bp Feature: domain Description: GIIM Note: maturase Location: 955911-956133 bp Feature: domain Description: GIIM Note: maturase Location: 955911-956133 bp Feature: gene Location: 956814-957035 bp Ori: AEH83716.1 Feature: domain Description: COG3415 Location: 956823-957033 bp Feature: domain Description: COG3415 Location: 95682 3-957033 bp Feature: gene Location: 957045-957599 bp Ori: AEH83717.1 Feature: domain Description: COG5654 Location: 957057-957591 bp Feature: domain Description: COG5654 Location: 957057-957591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF982 (pfam06169), RVT-GII, GIIM (pfam08388), MazF (COG2337), HTH_ARSR (smart00418), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225), KOG1232 (KOG1232, Proteins containing the FAD binding domain ), COG3335 (Transposase )
COG3415 (Transposase ), COG5654 (Uncharacterized conserved protein, contains RES domain )

Seq: CP001831.1 Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence (1633319 bp)
Overview 1 RT 1: 23902-27561 bp 2 RT 2: 453725-457603 bp 3 RT 3: 621785-625591 bp 4 RT 4: 922045-927542 bp 5 RT 5: 1071017-1075424 bp Neighborhood of RT #1 [23902, 27561] CHD COG3415 RVT-GII GIIM DDE_3 Neighborhood of RT #2 [453725, 457647] PBP2_Nitroaromatics_like COG3415 RVT-GII GIIM COG3335 LysR Neighborhood of RT #3 [621785, 625591] COG3415 RVT-GII GIIM COG3335 Neighborhood of RT #4 [922045, 927910] PRK08181 rve RVT-GII GIIM AdoMet_MTases Neighborhood of RT #5 [1071017, 1075549] PRK09183 COG4584 RVT-GII GIIM COG4584 COG3415 Feature: gene Location: 23902-24489 bp Ori: AEH81095.1 Gene: cyaO Feature: domain Description: CHD Location: 23944-24484 bp Feature: domain Description: CHD Location: 23 944-24484 bp Feature: gene Location: 24577-24960 bp Ori: AEH81096.1 Feature: domain Description: COG3415 Location: 24583-24931 bp Feature: domain Description: COG3 415 Location: 24583 -2493 1 bp Feature: gene Location: 25576-26835 bp Ori: AEH81097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25792-26446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25792-26446 bp Feature: domain Description: GIIM Note: maturase Location: 26527-26749 bp Feature: domain Description: GIIM Note: maturase Location: 26527-26749 bp Feature: gene Location: 26889-27404 bp Ori: AEH81098.1 Feature: domain Description: DDE_3 Location: 26919-27318 bp Feature: domain Description: DDE_3 Location: 26919-273 18 bp Feature: gene Location: 27376-27561 bp Feature: gene Location: 453725-454360 bp Ori: AEH81599.1 Feature: domain Description: PBP2_Nitroaromatics_like Location: 453734-454295 bp Feature: domain Description: PBP2_Nitroaromatics_like Location: 453 73 4-454295 bp Feature: gene Location: 454441-454848 bp Ori: AEH81600.1 Feature: domain Description: COG3415 Location: 454444-454846 bp Feature: domain Description: COG3 415 Location: 454444-454846 bp Feature: gene Location: 455443-456702 bp Ori: AEH81601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455659-456313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455659-4563 13 bp Feature: domain Description: GIIM Note: maturase Location: 456394-456616 bp Feature: domain Description: GIIM Note: maturase Location: 4563 94-456616 bp Feature: gene Location: 456756-457271 bp Ori: AEH81602.1 Feature: domain Description: COG3335 Location: 456876-457260 bp Feature: domain Description: COG3 3 3 5 Location: 456876-457260 bp Feature: gene Location: 457243-457647 bp Ori: AEH81603.1 Feature: domain Description: LysR Location: 457261-457603 bp Feature: domain Description: LysR Location: 457261-457603 bp Feature: gene Location: 621785-622081 bp Feature: gene Location: 622217-622624 bp Ori: AEH81779.1 Feature: domain Description: COG3415 Location: 622220-622622 bp Feature: domain Description: COG3 415 Location: 622220-622622 bp Feature: gene Location: 623219-624478 bp Ori: AEH81780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623435-624089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623 43 5-624089 bp Feature: domain Description: GIIM Note: maturase Location: 624170-624392 bp Feature: domain Description: GIIM Note: maturase Location: 624170-6243 92 bp Feature: gene Location: 624532-625047 bp Ori: AEH81781.1 Feature: domain Description: COG3335 Location: 624652-625036 bp Feature: domain Description: COG3 3 3 5 Location: 624652-62503 6 bp Feature: gene Location: 625394-625591 bp Feature: gene Location: 922045-922857 bp Ori: AEH82083.1 Feature: domain Description: PRK08181 Location: 922051-922813 bp Feature: domain Description: PRK08181 Location: 922051-922813 bp Feature: gene Location: 922854-924362 bp Ori: AEH82084.1 Feature: domain Description: rve Location: 923235-923628 bp Feature: domain Description: rve Location: 923 23 5-923 628 bp Feature: gene Location: 924560-926032 bp Ori: AEH82085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924926-925541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924926-925541 bp Feature: domain Description: GIIM Note: maturase Location: 925607-925817 bp Feature: domain Description: GIIM Note: maturase Location: 925607-925817 bp Feature: gene Location: 926534-926635 bp Feature: gene Location: 926846-927910 bp Ori: AEH82087.1 Feature: domain Description: AdoMet_MTases Location: 927158-927542 bp Feature: domain Description: AdoMet_MTases Location: 927158-927542 bp Feature: gene Location: 1071017-1071868 bp Ori: AEH82247.1 Feature: domain Description: PRK09183 Location: 1071071-1071605 bp Feature: domain Description: PRK09183 Location: 1071071-1071605 bp Feature: gene Location: 1071865-1072686 bp Ori: AEH82248.1 Feature: domain Description: COG4584 Location: 1071916-1072261 bp Feature: domain Description: COG4584 Location: 1071916-1072261 bp Feature: gene Location: 1072728-1074089 bp Ori: AEH82249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073055-1073670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073 055-1073 670 bp Feature: domain Description: GIIM Note: maturase Location: 1073724-1073940 bp Feature: domain Description: GIIM Note: maturase Location: 1073 724-1073 940 bp Feature: gene Location: 1074320-1075003 bp Ori: AEH82250.1 Feature: domain Description: COG4584 Location: 1074374-1074848 bp Feature: domain Description: COG4584 Location: 10743 74-1074848 bp Feature: gene Location: 1075235-1075549 bp Ori: AEH82251.1 Feature: domain Description: COG3415 Location: 1075238-1075424 bp Feature: domain Description: COG3 415 Location: 107523 8-1075424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), PBP2_Nitroaromatics_like (cd08417), COG3335 (Transposase ), LysR (COG0583), PRK08181 (transposase; Validated), rve (pfam00665)
AdoMet_MTases (cl17173), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )