myRT

myRT report for GCA_000219215.1_ASM21921v1

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Seq: CP002877.1 Cupriavidus necator N-1 chromosome 1, complete sequence (3872936 bp)
Overview 1 RT 1: 3644762-3650207 bp Neighborhood of RT #1 [3644762, 3650245] Autotransporter MFS_CitA RVT-GII GIIM Tag Feature: gene Location: 3644762-3645844 bp Ori: AEI78798.1 Feature: domain Description: Autotransporter Location: 3644981-3645350 bp Feature: domain Description: Autotransporter Location: 3644981 -3645350 bp Feature: gene Location: 3645926-3647236 bp Ori: AEI78799.1 Gene: proP4 Feature: domain Description: MFS_CitA Location: 3645986-3647213 bp Feature: domain Description: MFS_CitA Location: 3645986-364721 3 bp Feature: gene Location: 3647701-3649062 bp Ori: AEI78800.1 Gene: retA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3648028-3648643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3648028-3648643 bp Feature: domain Description: GIIM Note: maturase Location: 3648703-3648901 bp Feature: domain Description: GIIM Note: maturase Location: 3648703-3648901 bp Feature: gene Location: 3649166-3649522 bp Feature: gene Location: 3649628-3650245 bp Ori: AEI78802.1 Gene: tag Feature: domain Description: Tag Location: 3649655-3650207 bp Feature: domain Description: Tag Location: 3649655-3650207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Autotransporter (smart00869), MFS_CitA (cd17368), RVT-GII, GIIM (pfam08388), Tag (COG2818)

Seq: CP002878.1 Cupriavidus necator N-1 chromosome 2, complete sequence (2684606 bp)
Overview 1 RT 1: 1959207-1965091 bp 2 RT 2: 2001748-2008602 bp 3 RT 3: 2621669-2626863 bp Neighborhood of RT #1 [1959207, 1965126] HTH_1 PBP2_CrgA_like_9 PRK13015 RVT-GII gram_neg_porins MFS_ExuT_GudP_like Neighborhood of RT #2 [2001748, 2008631] Ga5DH-like_SDR_c COG3547 RVT-GII GIIM Tnp_DNA_bind InsQ Neighborhood of RT #3 [2621669, 2626883] BKACE RVT-GII gram_neg_porins YdeN Feature: gene Location: 1959207-1960154 bp Ori: AEI80775.1 Feature: domain Description: HTH_1 Location: 1959252-1959429 bp Feature: domain Description: HTH_1 Location: 19592 52 -195942 9 bp Feature: domain Description: PBP2_CrgA_like_9 Location: 1959516-1960104 bp Feature: domain Description: PBP2 _CrgA_like_9 Location: 1959516-1960104 bp Feature: gene Location: 1960239-1960700 bp Ori: AEI80776.1 Gene: aroQ Feature: domain Description: PRK13015 Location: 1960245-1960683 bp Feature: domain Description: PRK13015 Location: 19602 45-1960683 bp Feature: gene Location: 1960827-1962305 bp Ori: AEI80777.1 Gene: retA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1961238-1961925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19612 38-196192 5 bp Feature: gene Location: 1962662-1963726 bp Ori: AEI80778.1 Feature: domain Description: gram_neg_porins Location: 1962740-1963724 bp Feature: domain Description: gram_neg_porins Location: 1962 740-196372 4 bp Feature: gene Location: 1963798-1965126 bp Ori: AEI80779.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 1963894-1965091 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1963894-1965091 bp Feature: gene Location: 2001748-2002521 bp Ori: AEI80811.1 Gene: fabG10 Feature: domain Description: Ga5DH-like_SDR_c Location: 2001766-2002513 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 2 001766-2 002 513 bp Feature: gene Location: 2002957-2003979 bp Ori: AEI80812.1 Feature: domain Description: COG3547 Location: 2002978-2003926 bp Feature: domain Description: COG3547 Location: 2 002 978-2 00392 6 bp Feature: gene Location: 2004677-2005984 bp Ori: AEI80813.1 Gene: retA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004962-2005601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004962 -2 005601 bp Feature: domain Description: GIIM Note: maturase Location: 2005673-2005901 bp Feature: domain Description: GIIM Note: maturase Location: 2 005673-2 005901 bp Feature: gene Location: 2006489-2007532 bp Ori: AEI80814.1 Gene: tnpA1 Feature: domain Description: Tnp_DNA_bind Location: 2006564-2006732 bp Feature: domain Description: Tnp_DNA_bind Location: 2 006564-2 006732 bp Feature: gene Location: 2007570-2008631 bp Ori: AEI80815.1 Feature: domain Description: InsQ Location: 2007843-2008602 bp Feature: domain Description: InsQ Location: 2 007843-2 008602 bp Feature: gene Location: 2621669-2622727 bp Ori: AEI81377.1 Feature: domain Description: BKACE Location: 2621714-2622623 bp Feature: domain Description: BKACE Location: 2 62 1714-2 62 2 62 3 bp Feature: gene Location: 2622845-2623144 bp Feature: gene Location: 2623225-2624703 bp Ori: AEI81379.1 Gene: retA3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623636-2624323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 3636-2 62 432 3 bp Feature: gene Location: 2625060-2626223 bp Ori: AEI81380.1 Feature: domain Description: gram_neg_porins Location: 2625126-2626221 bp Feature: domain Description: gram_neg_porins Location: 2 62 512 6-2 62 62 2 1 bp Feature: gene Location: 2626290-2626883 bp Ori: AEI81381.1 Feature: domain Description: YdeN Location: 2626311-2626863 bp Feature: domain Description: YdeN Location: 2 62 6311-2 62 6863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_9 (cd08479), PRK13015 (3-dehydroquinate dehydratase; Reviewed), RVT-GII, gram_neg_porins (cd00342), MFS_ExuT_GudP_like (cd17319), Ga5DH-like_SDR_c (cd05347), COG3547 (Transposase ), GIIM (pfam08388), Tnp_DNA_bind (pfam14706)
InsQ (COG0675), BKACE (pfam05853), YdeN (COG3545)

Seq: CP002880.1 Cupriavidus necator N-1 plasmid pBB2, complete sequence (424140 bp)
Overview 1 RT 1: 229838-234789 bp Neighborhood of RT #1 [229838, 234791] RVT-GII GIIM COG3547 gram_neg_porins Feature: gene Location: 229838-231142 bp Ori: AEI83032.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230114-230738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 0114-23 073 8 bp Feature: domain Description: GIIM Note: maturase Location: 230834-231050 bp Feature: domain Description: GIIM Note: maturase Location: 23 083 4-23 1050 bp Feature: gene Location: 231414-232550 bp Ori: AEI83033.1 Feature: domain Description: COG3547 Location: 231630-232500 bp Feature: domain Description: COG3 547 Location: 23 163 0-23 2500 bp Feature: gene Location: 233751-234791 bp Ori: AEI83034.1 Feature: domain Description: gram_neg_porins Location: 233850-234789 bp Feature: domain Description: gram_neg_porins Location: 23 3 850-23 4789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), gram_neg_porins (cd00342)