myRT

myRT report for GCA_000219605.1_ASM21960v1

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Seq: CP002881.1 Pseudomonas stutzeri strain CGMCC 1.1803, complete genome (4547930 bp)
Overview 1 RT 1: 541121-545693 bp 2 RT 2: 1797765-1805790 bp 3 RT 3: 2980346-2988782 bp Neighborhood of RT #1 [541121, 545710] YicC RVT_N RVT-GII GIIM PRK09413 PRK09409 Neighborhood of RT #2 [1797765, 1805798] PRK01766 PRK00257 RVT_N RVT-GII YkfC HNHc PRK07994 PRK00153 Neighborhood of RT #3 [2980346, 2988782] CSP_CDS YeeA RVT-UG5 nitrilase Feature: gene Location: 541121-541984 bp Ori: AEJ03774.1 Feature: domain Description: YicC Location: 541124-541982 bp Feature: domain Description: YicC Location: 541 1 24-541 982 bp Feature: gene Location: 542880-542993 bp Feature: gene Location: 543168-544445 bp Ori: AEJ03776.1 Feature: domain Description: RVT_N Location: 543228-543471 bp Feature: domain Description: RVT_N Location: 543228-543471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543519-544170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54351 9-5441 70 bp Feature: domain Description: GIIM Note: maturase Location: 544245-544437 bp Feature: domain Description: GIIM Note: maturase Location: 544245-544437 bp Feature: gene Location: 544581-544886 bp Ori: AEJ03777.1 Gene: insC Feature: domain Description: PRK09413 Location: 544587-544881 bp Feature: domain Description: PRK0941 3 Location: 544587-544881 bp Feature: gene Location: 544883-545710 bp Ori: AEJ03778.1 Feature: domain Description: PRK09409 Location: 544886-545693 bp Feature: domain Description: PRK09409 Location: 544886-545693 bp Feature: gene Location: 1797765-1799159 bp Ori: AEJ04996.1 Feature: domain Description: PRK01766 Location: 1797789-1799133 bp Feature: domain Description: PRK01 766 Location: 1 797789-1 7991 33 bp Feature: gene Location: 1799281-1800426 bp Ori: AEJ04997.1 Gene: pdxB Feature: domain Description: PRK00257 Location: 1799284-1800418 bp Feature: domain Description: PRK00257 Location: 1 799284-1 80041 8 bp Feature: gene Location: 1801541-1803280 bp Ori: AEJ04998.1 Feature: domain Description: RVT_N Location: 1801601-1801844 bp Feature: domain Description: RVT_N Location: 1 801 601 -1 801 844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801892-1802543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 801 892-1 802543 bp Feature: domain Description: YkfC Location: 1802738-1802921 bp Feature: domain Description: YkfC Location: 1 802738-1 802921 bp Feature: domain Description: HNHc Note: nucleases Location: 1803077-1803221 bp Feature: domain Description: HNHc Note: nucleases Location: 1 803077-1 803221 bp Feature: gene Location: 1803434-1805452 bp Ori: AEJ04999.1 Gene: dnaX Feature: domain Description: PRK07994 Location: 1803437-1805435 bp Feature: domain Description: PRK07994 Location: 1 803437-1 805435 bp Feature: gene Location: 1805472-1805798 bp Ori: AEJ05000.1 Feature: domain Description: PRK00153 Location: 1805478-1805790 bp Feature: domain Description: PRK001 53 Location: 1 805478-1 805790 bp Feature: gene Location: 2980346-2982178 bp Ori: AEJ06058.1 Feature: domain Description: CSP_CDS Location: 2980364-2980553 bp Feature: domain Description: CSP_CDS Location: 2980364-2980553 bp Feature: gene Location: 2982183-2982935 bp Ori: AEJ06059.1 Feature: domain Description: YeeA Location: 2982189-2982867 bp Feature: domain Description: YeeA Location: 29821 89-2982867 bp Feature: gene Location: 2983970-2986966 bp Ori: AEJ06060.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2984432-2984909 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2984432-2984909 bp Feature: domain Description: nitrilase Location: 2986151-2986865 bp Feature: domain Description: nitrilase Location: 29861 51 -2986865 bp Feature: gene Location: 2986963-2987166 bp Feature: gene Location: 2987163-2988782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YicC (COG1561), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed), PRK09409 (IS2 transposase TnpB; Reviewed), PRK01766 (multidrug efflux protein; Reviewed), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), YkfC (COG3344), HNHc (smart00507)
PRK07994 (DNA polymerase III subunits gamma and tau; Validated), PRK00153 (YbaB/EbfC family nucleoid-associated protein), CSP_CDS (cd04458), YeeA (COG1002), RVT-UG5, nitrilase (cl11424)