myRT

myRT report for GCA_000219705.1_ASM21970v1

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Seq: CP002870.1 Pseudomonas putida S16, complete genome (5984790 bp)
Overview 1 RT 1: 147536-172419 bp 2 RT 2: 448987-459400 bp 3 RT 3: 888495-892085 bp 4 RT 4: 3723484-3727515 bp 5 RT 5: 3761736-3766620 bp 6 RT 6: 4332377-4339381 bp Neighborhood of RT #1 [147536, 172460] type_I_sec_LssB DUF772 RVT-GII GIIM DDE_Tnp_1 PQQ PQQ PQQ Calx_beta Cadherin_3 PA14 HemolysinCabind vWFA HemolysinCabind HemolysinCabind HemolysinCabind T1SS_VCA0849 Neighborhood of RT #2 [448987, 459402] Lrp PIN_LabA-like DUF2384 RVT-GII group_II_RT_mat HNHc PBP2_BvgS_HisK_like PRK09776 PAS PRK09776 PAC PRK10060 PRK05658 Neighborhood of RT #3 [888495, 892096] DUF772 RVT-GII GIIM DDE_Tnp_1 PssA Neighborhood of RT #4 [3723484, 3727616] BKR_like_SDR_like YciW RVT-DGRs DUF4224 Neighborhood of RT #5 [3761736, 3766643] DEXQc_UvrD DEXQc_UvrD UvrD IS5 RVT-GII GIIM IS5 Neighborhood of RT #6 [4332377, 4339614] PRK11139 PRK10238 RVT-GII GIIM PRK10700 ScpB Feature: gene Location: 147536-149572 bp Ori: AEJ10724.1 Feature: domain Description: type_I_sec_LssB Location: 147542-149558 bp Feature: domain Description: type_I_sec_LssB Location: 1 47542-1 49558 bp Feature: gene Location: 150112-150654 bp Ori: AEJ10725.1 Feature: domain Description: DUF772 Location: 150265-150451 bp Feature: domain Description: DUF772 Location: 1 50265-1 50451 bp Feature: gene Location: 151149-152402 bp Ori: AEJ10726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151362-152019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 362-1 5201 9 bp Feature: domain Description: GIIM Note: maturase Location: 152097-152319 bp Feature: domain Description: GIIM Note: maturase Location: 1 52097-1 5231 9 bp Feature: gene Location: 152527-152946 bp Ori: AEJ10727.1 Feature: domain Description: DDE_Tnp_1 Location: 152530-152896 bp Feature: domain Description: DDE_Tnp_1 Location: 1 52530-1 52896 bp Feature: gene Location: 153747-172460 bp Ori: AEJ10728.1 Feature: domain Description: PQQ Location: 156351-156429 bp Feature: domain Description: PQQ Location: 1 56351 -1 56429 bp Feature: domain Description: PQQ Location: 165636-165714 bp Feature: domain Description: PQQ Location: 1 65636-1 6571 4 bp Feature: domain Description: PQQ Location: 166299-166377 bp Feature: domain Description: PQQ Location: 1 66299-1 66377 bp Feature: domain Description: Calx_beta Location: 168846-168987 bp Feature: domain Description: Calx_beta Location: 1 68846-1 68987 bp Feature: domain Description: Cadherin_3 Location: 169464-169761 bp Feature: domain Description: Cadherin_3 Location: 1 69464-1 69761 bp Feature: domain Description: PA14 Location: 170145-170316 bp Feature: domain Description: PA1 4 Location: 1 701 45-1 7031 6 bp Feature: domain Description: HemolysinCabind Location: 170814-170865 bp Feature: domain Description: HemolysinCabind Location: 1 7081 4-1 70865 bp Feature: domain Description: vWFA Location: 170907-171399 bp Feature: domain Description: vWFA Location: 1 70907-1 71 399 bp Feature: domain Description: HemolysinCabind Location: 171765-171813 bp Feature: domain Description: HemolysinCabind Location: 1 71 765-1 71 81 3 bp Feature: domain Description: HemolysinCabind Location: 171966-172041 bp Feature: domain Description: HemolysinCabind Location: 1 71 966-1 72041 bp Feature: domain Description: HemolysinCabind Location: 172044-172146 bp Feature: domain Description: HemolysinCabind Location: 1 72044-1 721 46 bp Feature: domain Description: T1SS_VCA0849 Location: 172179-172419 bp Feature: domain Description: T1 SS_VCA0849 Location: 1 721 79-1 7241 9 bp Feature: gene Location: 448987-449448 bp Ori: AEJ10964.1 Feature: domain Description: Lrp Location: 449011-449425 bp Feature: domain Description: Lrp Location: 44901 1 -449425 bp Feature: gene Location: 449898-450845 bp Ori: AEJ10965.1 Feature: domain Description: PIN_LabA-like Location: 449946-450492 bp Feature: domain Description: PIN_LabA-like Location: 449946-450492 bp Feature: domain Description: DUF2384 Location: 450696-450810 bp Feature: domain Description: DUF2384 Location: 450696-45081 0 bp Feature: gene Location: 451046-453055 bp Ori: AEJ10966.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451472-452291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 472-452291 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 452495-452627 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 452495-452627 bp Feature: domain Description: HNHc Note: nucleases Location: 452816-452981 bp Feature: domain Description: HNHc Note: nucleases Location: 45281 6-452981 bp Feature: gene Location: 453596-457339 bp Ori: AEJ10967.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 453701-454358 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 453701 -454358 bp Feature: domain Description: PRK09776 Location: 454667-454892 bp Feature: domain Description: PRK09776 Location: 454667-454892 bp Feature: domain Description: PAS Location: 454967-455234 bp Feature: domain Description: PAS Location: 454967-455234 bp Feature: domain Description: PRK09776 Location: 455237-455477 bp Feature: domain Description: PRK09776 Location: 455237-455477 bp Feature: domain Description: PAC Location: 455504-455618 bp Feature: domain Description: PAC Location: 455504-45561 8 bp Feature: domain Description: PRK10060 Location: 455630-457280 bp Feature: domain Description: PRK1 0060 Location: 455630-457280 bp Feature: gene Location: 457552-459402 bp Ori: AEJ10968.1 Feature: domain Description: PRK05658 Location: 457564-459400 bp Feature: domain Description: PRK05658 Location: 457564-459400 bp Feature: gene Location: 888495-888665 bp Feature: gene Location: 888946-889488 bp Ori: AEJ11362.1 Feature: domain Description: DUF772 Location: 889099-889285 bp Feature: domain Description: DUF772 Location: 889099-889285 bp Feature: gene Location: 889983-891215 bp Ori: AEJ11363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890196-890853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8901 96-890853 bp Feature: domain Description: GIIM Note: maturase Location: 890931-891153 bp Feature: domain Description: GIIM Note: maturase Location: 890931 -891 1 53 bp Feature: gene Location: 891360-891779 bp Ori: AEJ11364.1 Feature: domain Description: DDE_Tnp_1 Location: 891363-891729 bp Feature: domain Description: DDE_Tnp_1 Location: 891 363-891 729 bp Feature: gene Location: 891914-892096 bp Ori: AEJ11365.1 Feature: domain Description: PssA Location: 891917-892085 bp Feature: domain Description: PssA Location: 891 91 7-892085 bp Feature: gene Location: 3723484-3724188 bp Ori: AEJ13872.1 Feature: domain Description: BKR_like_SDR_like Location: 3723496-3724180 bp Feature: domain Description: BKR_like_SDR_like Location: 3723496-37241 80 bp Feature: gene Location: 3724342-3724791 bp Ori: AEJ13873.1 Feature: domain Description: YciW Location: 3724381-3724768 bp Feature: domain Description: YciW Location: 3724381 -3724768 bp Feature: gene Location: 3725214-3725624 bp Ori: AEJ13874.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3725220-3725469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3725220-3725469 bp Feature: gene Location: 3726195-3726404 bp Feature: gene Location: 3727371-3727616 bp Ori: AEJ13876.1 Feature: domain Description: DUF4224 Location: 3727386-3727515 bp Feature: domain Description: DUF4224 Location: 3727386-372751 5 bp Feature: gene Location: 3761736-3763607 bp Ori: AEJ13907.1 Feature: domain Description: DEXQc_UvrD Location: 3761814-3762192 bp Feature: domain Description: DEXQc_UvrD Location: 3761 81 4-37621 92 bp Feature: domain Description: DEXQc_UvrD Location: 3762207-3762471 bp Feature: domain Description: DEXQc_UvrD Location: 3762207-3762471 bp Feature: domain Description: UvrD Location: 3763311-3763527 bp Feature: domain Description: UvrD Location: 376331 1 -3763527 bp Feature: gene Location: 3763809-3764267 bp Ori: AEJ13908.1 Feature: domain Description: IS5 Location: 3763812-3764244 bp Feature: domain Description: IS5 Location: 376381 2-3764244 bp Feature: gene Location: 3764353-3765606 bp Ori: AEJ13909.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3764566-3765223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3764566-3765223 bp Feature: domain Description: GIIM Note: maturase Location: 3765301-3765523 bp Feature: domain Description: GIIM Note: maturase Location: 3765301 -3765523 bp Feature: gene Location: 3766101-3766643 bp Ori: AEJ13910.1 Feature: domain Description: IS5 Location: 3766287-3766620 bp Feature: domain Description: IS5 Location: 3766287-3766620 bp Feature: gene Location: 4332377-4333261 bp Ori: AEJ14380.1 Feature: domain Description: PRK11139 Location: 4332401-4333259 bp Feature: domain Description: PRK1 1 1 39 Location: 4332401 -4333259 bp Feature: gene Location: 4333438-4334874 bp Ori: AEJ14381.1 Feature: domain Description: PRK10238 Location: 4333471-4334836 bp Feature: domain Description: PRK1 0238 Location: 4333471 -4334836 bp Feature: gene Location: 4335604-4337124 bp Ori: AEJ14382.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4336060-4336675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4336060-4336675 bp Feature: domain Description: GIIM Note: maturase Location: 4336732-4336957 bp Feature: domain Description: GIIM Note: maturase Location: 4336732-4336957 bp Feature: gene Location: 4337502-4338569 bp Ori: AEJ14383.1 Feature: domain Description: PRK10700 Location: 4337550-4338309 bp Feature: domain Description: PRK1 0700 Location: 4337550-4338309 bp Feature: gene Location: 4338844-4339614 bp Ori: AEJ14384.1 Feature: domain Description: ScpB Location: 4338859-4339381 bp Feature: domain Description: ScpB Location: 4338859-4339381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), PQQ (smart00564), Calx_beta (smart00237), Cadherin_3 (pfam16184), PA14 (smart00758), HemolysinCabind (pfam00353)
vWFA (cl00057), T1SS_VCA0849 (TIGR03661), Lrp (COG1522), PIN_LabA-like (cd18726), DUF2384 (pfam09722), group_II_RT_mat (TIGR04416), HNHc (smart00507), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PAC (smart00086), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PssA (COG1183), BKR_like_SDR_like (cd05344), YciW (COG2128), RVT-DGRs, DUF4224 (pfam13986), DEXQc_UvrD (cd17932), UvrD (COG0210)
IS5 (COG3039), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), PRK10238 (aromatic amino acid transporter AroP), PRK10700 (23S rRNA pseudouridine(2605) synthase RluB), ScpB (COG1386)