myRT

myRT report for GCA_000219765.1_ASM21976v1

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Seq: CP002904.1 Streptococcus equi subsp. zooepidemicus ATCC 35246, complete genome (2167264 bp)
Overview 1 RT 1: 783533-790187 bp 2 RT 2: 1110060-1114630 bp 3 RT 3: 1586602-1598528 bp Neighborhood of RT #1 [783533, 790187] XRE T4SS-DNA_transf RVT-GII TraG-D_C Neighborhood of RT #2 [1110060, 1114701] HTH_26 Relaxase RVT-GII Intron_maturas2 Relaxase MobC Neighborhood of RT #3 [1586602, 1598539] TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI VirD4 RVT-GII T4SS-DNA_transf YdiL Feature: gene Location: 783533-783718 bp Ori: AEJ24994.1 Feature: domain Description: XRE Location: 783536-783707 bp Feature: domain Description: XRE Location: 783536-783707 bp Feature: gene Location: 784175-784804 bp Ori: AEJ24995.1 Feature: domain Description: T4SS-DNA_transf Location: 784187-784748 bp Feature: domain Description: T4SS-DNA_transf Location: 7841 87-784748 bp Feature: gene Location: 785556-787466 bp Ori: AEJ24996.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785865-786621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785865-786621 bp Feature: gene Location: 787492-788079 bp Ori: AEJ24997.1 Feature: domain Description: TraG-D_C Location: 787570-787891 bp Feature: domain Description: TraG-D_C Location: 787570-787891 bp Feature: gene Location: 789813-790187 bp Feature: gene Location: 1110060-1110218 bp Ori: AEJ25295.1 Feature: domain Description: HTH_26 Location: 1110063-1110210 bp Feature: domain Description: HTH_26 Location: 1 1 1 0063-1 1 1 021 0 bp Feature: gene Location: 1110425-1111522 bp Ori: AEJ25296.1 Feature: domain Description: Relaxase Location: 1110434-1110821 bp Feature: domain Description: Relaxase Location: 1 1 1 0434-1 1 1 0821 bp Feature: gene Location: 1111668-1113470 bp Ori: AEJ25297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1111944-1112748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 1 944-1 1 1 2748 bp Feature: domain Description: Intron_maturas2 Location: 1112856-1113135 bp Feature: domain Description: Intron_maturas2 Location: 1 1 1 2856-1 1 1 31 35 bp Feature: gene Location: 1114007-1114153 bp Ori: AEJ25298.1 Feature: domain Description: Relaxase Location: 1114019-1114118 bp Feature: domain Description: Relaxase Location: 1 1 1 401 9-1 1 1 41 1 8 bp Feature: gene Location: 1114369-1114701 bp Ori: AEJ25299.1 Feature: domain Description: MobC Location: 1114534-1114630 bp Feature: domain Description: MobC Location: 1 1 1 4534-1 1 1 4630 bp Feature: gene Location: 1586602-1587570 bp Ori: AEJ25762.1 Feature: domain Description: TraC-F-type Location: 1586695-1587391 bp Feature: domain Description: TraC-F-type Location: 1 586695-1 587391 bp Feature: gene Location: 1587575-1589272 bp Ori: AEJ25763.1 Feature: domain Description: RVT_N Location: 1587671-1587911 bp Feature: domain Description: RVT_N Location: 1 587671 -1 58791 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1587959-1588619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 587959-1 58861 9 bp Feature: domain Description: GIIM Note: maturase Location: 1588688-1588907 bp Feature: domain Description: GIIM Note: maturase Location: 1 588688-1 588907 bp Feature: gene Location: 1589777-1591243 bp Ori: AEJ25764.1 Feature: domain Description: TraC-F-type Location: 1590074-1590926 bp Feature: domain Description: TraC-F-type Location: 1 590074-1 590926 bp Feature: gene Location: 1591221-1591574 bp Ori: AEJ25765.1 Feature: domain Description: PrgI Location: 1591233-1591491 bp Feature: domain Description: PrgI Location: 1 591 233-1 591 491 bp Feature: gene Location: 1592507-1592749 bp Feature: gene Location: 1592767-1593342 bp Ori: AEJ25768.1 Gene: traD Feature: domain Description: VirD4 Location: 1592797-1593238 bp Feature: domain Description: VirD4 Location: 1 592797-1 593238 bp Feature: gene Location: 1593413-1595323 bp Ori: AEJ25769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1593722-1594478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 593722-1 594478 bp Feature: gene Location: 1596075-1597406 bp Ori: AEJ25770.1 Gene: traG Feature: domain Description: T4SS-DNA_transf Location: 1596462-1597350 bp Feature: domain Description: T4SS-DNA_transf Location: 1 596462-1 597350 bp Feature: gene Location: 1597958-1598539 bp Ori: AEJ25771.1 Feature: domain Description: YdiL Location: 1597985-1598528 bp Feature: domain Description: YdiL Location: 1 597985-1 598528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), T4SS-DNA_transf (pfam02534), RVT-GII, TraG-D_C (pfam12696), HTH_26 (pfam13443), Relaxase (pfam03432), Intron_maturas2 (pfam01348), MobC (pfam05713), TraC-F-type (TIGR02746), RVT_N (pfam13655)
GIIM (pfam08388), PrgI (pfam12666), VirD4 (COG3505), YdiL (COG1266)