myRT

myRT report for GCA_000219855.1_ASM21985v1

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Seq: CP002901.1 Sulfobacillus acidophilus TPY, complete genome (3551206 bp)
Overview 1 RT 1: 403223-410762 bp 2 RT 2: 581977-587457 bp 3 RT 3: 937270-941943 bp 4 RT 4: 1363568-1367274 bp 5 RT 5: 1967790-1970817 bp 6 RT 6: 2118870-2125332 bp 7 RT 7: 2128445-2133940 bp 8 RT 8: 2901238-2906535 bp Neighborhood of RT #1 [403223, 410762] TrwC TraA_Ti TraA_Ti RVT-GII HNH VirD4 Neighborhood of RT #2 [581977, 587534] DDE_Tnp_1_4 RVT-GII GIIM BaeS Neighborhood of RT #3 [937270, 941993] SAF RVT-GII GIIM TadB Neighborhood of RT #4 [1363568, 1367279] HTH_Tnp_1 PHA02517 RVT-GII InsE InsE Neighborhood of RT #5 [1967790, 1970867] PHA02517 HTH_Tnp_1 RVT-GII KOG4768 PHA02517 INT_RitB_C_like Neighborhood of RT #6 [2118870, 2125418] HTH_32 DDE_3 RVT-GII GIIM RVT-GII GIIM RVT-GII IstB_IS21 INT_RitC_C_like Neighborhood of RT #7 [2128445, 2133940] RVT-GII GIIM PotE Neighborhood of RT #8 [2901238, 2906927] Acetyltransf_1 RVT-GII YkfC COG4584 Feature: gene Location: 403223-403387 bp Feature: gene Location: 403546-406182 bp Ori: AEJ38622.1 Feature: domain Description: TrwC Location: 403585-404368 bp Feature: domain Description: TrwC Location: 403585-404368 bp Feature: domain Description: TraA_Ti Location: 404446-405010 bp Feature: domain Description: TraA_Ti Location: 404446-40501 0 bp Feature: domain Description: TraA_Ti Location: 405169-406126 bp Feature: domain Description: TraA_Ti Location: 4051 69-4061 26 bp Feature: gene Location: 407128-409107 bp Ori: AEJ38623.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407530-408238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407530-408238 bp Feature: domain Description: HNH Note: nucleases Location: 408886-409021 bp Feature: domain Description: HNH Note: nucleases Location: 408886-409021 bp Feature: gene Location: 409237-410559 bp Ori: AEJ38624.1 Feature: domain Description: VirD4 Location: 409246-410338 bp Feature: domain Description: VirD4 Location: 409246-41 0338 bp Feature: gene Location: 410595-410762 bp Feature: gene Location: 581977-582828 bp Ori: AEJ38820.1 Feature: domain Description: DDE_Tnp_1_4 Location: 581992-582778 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 581 992-582778 bp Feature: gene Location: 582825-583352 bp Feature: gene Location: 584040-585206 bp Ori: AEJ38822.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584205-584832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584205-584832 bp Feature: domain Description: GIIM Note: maturase Location: 584901-585099 bp Feature: domain Description: GIIM Note: maturase Location: 584901 -585099 bp Feature: gene Location: 585235-585477 bp Feature: gene Location: 586038-587534 bp Ori: AEJ38824.1 Gene: torS Feature: domain Description: BaeS Location: 586524-587457 bp Feature: domain Description: BaeS Location: 586524-587457 bp Feature: gene Location: 937270-937770 bp Ori: AEJ39188.1 Feature: domain Description: SAF Location: 937342-937504 bp Feature: domain Description: SAF Location: 937342-937504 bp Feature: gene Location: 937767-938738 bp Feature: gene Location: 939354-940613 bp Ori: AEJ39190.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939546-940164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939546-9401 64 bp Feature: domain Description: GIIM Note: maturase Location: 940218-940431 bp Feature: domain Description: GIIM Note: maturase Location: 94021 8-940431 bp Feature: gene Location: 940687-941322 bp Feature: gene Location: 941322-941993 bp Ori: AEJ39192.1 Feature: domain Description: TadB Location: 941364-941943 bp Feature: domain Description: TadB Location: 941 364-941 943 bp Feature: gene Location: 1363568-1363870 bp Ori: AEJ39627.1 Feature: domain Description: HTH_Tnp_1 Location: 1363571-1363811 bp Feature: domain Description: HTH_Tnp_1 Location: 1 363571 -1 36381 1 bp Feature: gene Location: 1363881-1364720 bp Ori: AEJ39628.1 Feature: domain Description: PHA02517 Location: 1363989-1364667 bp Feature: domain Description: PHA0251 7 Location: 1 363989-1 364667 bp Feature: gene Location: 1364850-1365515 bp Ori: AEJ39629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1365081-1365486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 365081 -1 365486 bp Feature: gene Location: 1365820-1366371 bp Ori: AEJ39630.1 Feature: domain Description: InsE Location: 1365844-1366120 bp Feature: domain Description: InsE Location: 1 365844-1 3661 20 bp Feature: gene Location: 1366983-1367279 bp Ori: AEJ39631.1 Feature: domain Description: InsE Location: 1367004-1367274 bp Feature: domain Description: InsE Location: 1 367004-1 367274 bp Feature: gene Location: 1967790-1968446 bp Ori: AEJ40245.1 Feature: domain Description: PHA02517 Location: 1967793-1968393 bp Feature: domain Description: PHA0251 7 Location: 1 967793-1 968393 bp Feature: gene Location: 1968649-1968939 bp Ori: AEJ40246.1 Feature: domain Description: HTH_Tnp_1 Location: 1968652-1968892 bp Feature: domain Description: HTH_Tnp_1 Location: 1 968652-1 968892 bp Feature: gene Location: 1969023-1969859 bp Ori: AEJ40247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969026-1969338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969026-1 969338 bp Feature: domain Description: KOG4768 Location: 1969476-1969623 bp Feature: domain Description: KOG4768 Location: 1 969476-1 969623 bp Feature: gene Location: 1969997-1970452 bp Ori: AEJ40248.1 Feature: domain Description: PHA02517 Location: 1970000-1970399 bp Feature: domain Description: PHA0251 7 Location: 1 970000-1 970399 bp Feature: gene Location: 1970493-1970867 bp Ori: AEJ40249.1 Feature: domain Description: INT_RitB_C_like Location: 1970562-1970817 bp Feature: domain Description: INT_RitB_C_like Location: 1 970562-1 97081 7 bp Feature: gene Location: 2118870-2119004 bp Feature: gene Location: 2119229-2120377 bp Ori: AEJ40428.1 Feature: domain Description: HTH_32 Location: 2119424-2119631 bp Feature: domain Description: HTH_32 Location: 21 1 9424-21 1 9631 bp Feature: domain Description: DDE_3 Location: 2119913-2120276 bp Feature: domain Description: DDE_3 Location: 21 1 991 3-21 20276 bp Feature: gene Location: 2121011-2121463 bp Ori: AEJ40429.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2121017-2121089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 21 01 7-21 21 089 bp Feature: domain Description: GIIM Note: maturase Location: 2121158-2121356 bp Feature: domain Description: GIIM Note: maturase Location: 21 21 1 58-21 21 356 bp Feature: gene Location: 2121611-2122855 bp Ori: AEJ40430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2121815-2122472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 21 81 5-21 22472 bp Feature: domain Description: GIIM Note: maturase Location: 2122553-2122775 bp Feature: domain Description: GIIM Note: maturase Location: 21 22553-21 22775 bp Feature: gene Location: 2123333-2124304 bp Ori: AEJ40431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2123597-2124284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 23597-21 24284 bp Feature: gene Location: 2124874-2124990 bp Ori: AEJ40432.1 Feature: domain Description: IstB_IS21 Location: 2124880-2124970 bp Feature: domain Description: IstB_IS21 Location: 21 24880-21 24970 bp Feature: gene Location: 2125206-2125418 bp Ori: AEJ40433.1 Feature: domain Description: INT_RitC_C_like Location: 2125209-2125332 bp Feature: domain Description: INT_RitC_C_like Location: 21 25209-21 25332 bp Feature: gene Location: 2128445-2128999 bp Feature: gene Location: 2129050-2129694 bp Feature: gene Location: 2129914-2131272 bp Ori: AEJ40440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130205-2130823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 30205-21 30823 bp Feature: domain Description: GIIM Note: maturase Location: 2130877-2131102 bp Feature: domain Description: GIIM Note: maturase Location: 21 30877-21 31 1 02 bp Feature: gene Location: 2132049-2133503 bp Ori: AEJ40441.1 Feature: domain Description: PotE Location: 2132082-2133390 bp Feature: domain Description: PotE Location: 21 32082-21 33390 bp Feature: gene Location: 2133707-2133940 bp Feature: gene Location: 2901238-2903454 bp Feature: gene Location: 2903487-2903897 bp Ori: AEJ41277.1 Feature: domain Description: Acetyltransf_1 Location: 2903541-2903835 bp Feature: domain Description: Acetyltransf_1 Location: 2903541 -2903835 bp Feature: gene Location: 2904040-2904309 bp Ori: AEJ41278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2904046-2904286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2904046-2904286 bp Feature: gene Location: 2904309-2904614 bp Ori: AEJ41279.1 Feature: domain Description: YkfC Location: 2904321-2904561 bp Feature: domain Description: YkfC Location: 2904321 -2904561 bp Feature: gene Location: 2905680-2906927 bp Ori: AEJ41280.1 Feature: domain Description: COG4584 Location: 2905731-2906535 bp Feature: domain Description: COG4584 Location: 2905731 -2906535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrwC (pfam08751), TraA_Ti (TIGR02768), RVT-GII, HNH (pfam01844), VirD4 (COG3505), DDE_Tnp_1_4 (pfam13701), GIIM (pfam08388), BaeS (COG0642), SAF (smart00858), TadB (COG4965)
HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), INT_RitB_C_like (cd00797), HTH_32 (pfam13565), DDE_3 (pfam13358), IstB_IS21 (pfam01695), INT_RitC_C_like (cd01182), PotE (COG0531)
Acetyltransf_1 (pfam00583), YkfC (COG3344), COG4584 (Transposase )