myRT

myRT report for GCA_000221025.1_ASM22102v1

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Seq: CP002574.1 Acidithiobacillus caldus SM-1 megaplasmid, complete sequence (251782 bp)
Overview 1 RT 1: 177104-183723 bp 2 RT 2: 197901-208030 bp Neighborhood of RT #1 [177104, 183723] COG3547 DDE_Tnp_IS66 RVT-GII PRK06526 COG4584 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [197901, 208038] COG4584 COG4584 IS5 RVT-GII LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII GIIM zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 PRK09221 Feature: gene Location: 177104-178132 bp Ori: AEK59709.1 Feature: domain Description: COG3547 Location: 177119-178076 bp Feature: domain Description: COG3547 Location: 1 771 1 9-1 78076 bp Feature: gene Location: 178397-178837 bp Ori: AEK59710.1 Feature: domain Description: DDE_Tnp_IS66 Location: 178400-178673 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 78400-1 78673 bp Feature: gene Location: 178919-179578 bp Ori: AEK59711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178922-179222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 78922-1 79222 bp Feature: gene Location: 179640-180428 bp Ori: AEK59712.1 Feature: domain Description: PRK06526 Location: 179676-180369 bp Feature: domain Description: PRK06526 Location: 1 79676-1 80369 bp Feature: gene Location: 180428-181669 bp Ori: AEK59713.1 Feature: domain Description: COG4584 Location: 180554-181301 bp Feature: domain Description: COG4584 Location: 1 80554-1 81 301 bp Feature: gene Location: 181721-182329 bp Ori: AEK59714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181925-182312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 925-1 8231 2 bp Feature: gene Location: 183040-183561 bp Ori: AEK59715.1 Feature: domain Description: DDE_Tnp_IS66 Location: 183058-183403 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 83058-1 83403 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 183424-183535 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 83424-1 83535 bp Feature: gene Location: 183580-183723 bp Feature: gene Location: 197901-199166 bp Ori: AEK59732.1 Feature: domain Description: COG4584 Location: 197907-198537 bp Feature: domain Description: COG4584 Location: 1 97907-1 98537 bp Feature: domain Description: COG4584 Location: 198597-199161 bp Feature: domain Description: COG4584 Location: 1 98597-1 991 61 bp Feature: gene Location: 200052-201074 bp Ori: AEK59733.1 Feature: domain Description: IS5 Location: 200268-201060 bp Feature: domain Description: IS5 Location: 200268-201 060 bp Feature: gene Location: 201467-201586 bp Ori: AEK59734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201482-201581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 482-201 581 bp Feature: gene Location: 201622-201933 bp Feature: gene Location: 201923-203485 bp Ori: AEK59736.1 Feature: domain Description: LZ_Tnp_IS66 Location: 202019-202199 bp Feature: domain Description: LZ_Tnp_IS66 Location: 20201 9-2021 99 bp Feature: domain Description: DDE_Tnp_IS66 Location: 202448-203288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 202448-203288 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 203309-203417 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 203309-20341 7 bp Feature: gene Location: 203494-203874 bp Ori: AEK59737.1 Feature: domain Description: TnpB_IS66 Location: 203524-203815 bp Feature: domain Description: TnpB_IS66 Location: 203524-20381 5 bp Feature: gene Location: 203877-204176 bp Feature: gene Location: 204196-205203 bp Ori: AEK59739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204241-204829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204241 -204829 bp Feature: domain Description: GIIM Note: maturase Location: 204898-205105 bp Feature: domain Description: GIIM Note: maturase Location: 204898-2051 05 bp Feature: gene Location: 205520-206734 bp Ori: AEK59740.1 Feature: domain Description: zf-ISL3 Location: 205649-205778 bp Feature: domain Description: zf-ISL3 Location: 205649-205778 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 205796-205943 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 205796-205943 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 205988-206690 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 205988-206690 bp Feature: gene Location: 206761-208038 bp Ori: AEK59741.1 Feature: domain Description: PRK09221 Location: 206764-208030 bp Feature: domain Description: PRK09221 Location: 206764-208030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, PRK06526 (transposase; Provisional), COG4584 (Transposase ), DDE_Tnp_IS66_C (pfam13817), IS5 (COG3039), LZ_Tnp_IS66 (pfam13007), TnpB_IS66 (pfam05717), GIIM (pfam08388)
zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), PRK09221 (beta alanine--pyruvate transaminase; Provisional)