myRT

myRT report for GCA_000227625.1_ASM22762v1

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Seq: CP003034.1 Escherichia coli O7:K1 str. CE10, complete genome (5313531 bp)
Overview 1 RT 1: 4272819-4276701 bp 2 RT 2: 4313655-4318327 bp 3 RT 3: 5278604-5284256 bp Neighborhood of RT #1 [4272819, 4276706] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #2 [4313655, 4318797] InsE PHA02517 RVT-GII GIIM TetR_N TetR_C_28 CadC1 Neighborhood of RT #3 [5278604, 5284258] Peptidase_S74 RVT-UG17 PRK10597 prfC Feature: gene Location: 4272819-4273277 bp Ori: AEQ14901.1 Gene: dut Feature: domain Description: dut Location: 4272825-4273272 bp Feature: domain Description: dut Location: 4272825-4273272 bp Feature: gene Location: 4273384-4273980 bp Ori: AEQ14902.1 Gene: slmA Feature: domain Description: slmA Location: 4273390-4273966 bp Feature: domain Description: slmA Location: 4273390-4273966 bp Feature: gene Location: 4274026-4274985 bp Ori: AEQ14903.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4274161-4274710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42741 61 -427471 0 bp Feature: gene Location: 4275283-4275924 bp Ori: AEQ14904.1 Gene: pyrE Feature: domain Description: pyrE Location: 4275286-4275919 bp Feature: domain Description: pyrE Location: 4275286-427591 9 bp Feature: gene Location: 4275990-4276706 bp Ori: AEQ14905.1 Gene: rph Feature: domain Description: rph Location: 4275993-4276701 bp Feature: domain Description: rph Location: 4275993-4276701 bp Feature: gene Location: 4313655-4313930 bp Ori: AEQ14937.1 Feature: domain Description: InsE Location: 4313697-4313928 bp Feature: domain Description: InsE Location: 431 3697-431 3928 bp Feature: gene Location: 4313930-4314409 bp Ori: AEQ14938.1 Feature: domain Description: PHA02517 Location: 4313990-4314344 bp Feature: domain Description: PHA0251 7 Location: 431 3990-431 4344 bp Feature: gene Location: 4315001-4316524 bp Ori: AEQ14939.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4315274-4316006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 5274-431 6006 bp Feature: domain Description: GIIM Note: maturase Location: 4316081-4316279 bp Feature: domain Description: GIIM Note: maturase Location: 431 6081 -431 6279 bp Feature: gene Location: 4317378-4317956 bp Ori: AEQ14940.1 Feature: domain Description: TetR_N Location: 4317447-4317582 bp Feature: domain Description: TetR_N Location: 431 7447-431 7582 bp Feature: domain Description: TetR_C_28 Location: 4317657-4317945 bp Feature: domain Description: TetR_C_28 Location: 431 7657-431 7945 bp Feature: gene Location: 4317979-4318797 bp Ori: AEQ14941.1 Feature: domain Description: CadC1 Location: 4317994-4318327 bp Feature: domain Description: CadC1 Location: 431 7994-431 8327 bp Feature: gene Location: 5278604-5279644 bp Ori: AEQ15829.1 Feature: domain Description: Peptidase_S74 Location: 5279285-5279432 bp Feature: domain Description: Peptidase_S74 Location: 5279285-5279432 bp Feature: gene Location: 5279681-5279974 bp Feature: gene Location: 5280082-5281452 bp Ori: AEQ15831.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5280310-5280916 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 528031 0-528091 6 bp Feature: gene Location: 5282204-5282452 bp Ori: AEQ15832.1 Feature: domain Description: PRK10597 Location: 5282207-5282447 bp Feature: domain Description: PRK1 0597 Location: 5282207-5282447 bp Feature: gene Location: 5282672-5284258 bp Ori: AEQ15833.1 Gene: prfC Feature: domain Description: prfC Location: 5282690-5284256 bp Feature: domain Description: prfC Location: 5282690-5284256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TetR_N (pfam00440)
TetR_C_28 (pfam17937), CadC1 (COG3710), Peptidase_S74 (pfam13884), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)