myRT

myRT report for GCA_000227745.3_ASM22774v3

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Seq: CP003154.1 Thiocystis violascens DSM 198, complete genome (5017071 bp)
Overview 1 RT 1: 1281927-1286572 bp 2 RT 2: 1797399-1803987 bp 3 RT 3: 3084711-3088862 bp Neighborhood of RT #1 [1281927, 1286661] PIN_MtVapC20-like RVT-Retrons HTH_XRE DDE_Tnp_1_assoc YhhI YhhI Neighborhood of RT #2 [1797399, 1803992] DDE_Tnp_1_assoc YhhI YhhI ABC_ATPase ABC_ATPase RVT-Retrons PSK_trans_fac YraQ Neighborhood of RT #3 [3084711, 3088873] TIR_2 VagC RVT-GII GIIM HicB HicA_toxin Feature: gene Location: 1281927-1282160 bp Feature: gene Location: 1282157-1282573 bp Ori: AFL73218.1 Feature: domain Description: PIN_MtVapC20-like Location: 1282175-1282553 bp Feature: domain Description: PIN_MtVapC20-like Location: 1 2821 75-1 282553 bp Feature: gene Location: 1282711-1283664 bp Ori: AFL73219.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1282894-1283386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 282894-1 283386 bp Feature: gene Location: 1283671-1283991 bp Ori: AFL73220.1 Feature: domain Description: HTH_XRE Location: 1283689-1283860 bp Feature: domain Description: HTH_XRE Location: 1 283689-1 283860 bp Feature: gene Location: 1285537-1286661 bp Ori: AFL73221.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 1285567-1285828 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 1 285567-1 285828 bp Feature: domain Description: YhhI Location: 1285972-1286275 bp Feature: domain Description: YhhI Location: 1 285972-1 286275 bp Feature: domain Description: YhhI Location: 1286392-1286572 bp Feature: domain Description: YhhI Location: 1 286392-1 286572 bp Feature: gene Location: 1797399-1798583 bp Ori: AFL73634.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 1797435-1797690 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 1 797435-1 797690 bp Feature: domain Description: YhhI Location: 1797834-1798140 bp Feature: domain Description: YhhI Location: 1 797834-1 7981 40 bp Feature: domain Description: YhhI Location: 1798236-1798434 bp Feature: domain Description: YhhI Location: 1 798236-1 798434 bp Feature: gene Location: 1798721-1800049 bp Ori: AFL73635.1 Feature: domain Description: ABC_ATPase Location: 1798769-1799093 bp Feature: domain Description: ABC_ATPase Location: 1 798769-1 799093 bp Feature: domain Description: ABC_ATPase Location: 1799324-1799498 bp Feature: domain Description: ABC_ATPase Location: 1 799324-1 799498 bp Feature: gene Location: 1800049-1801002 bp Ori: AFL73636.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1800163-1800715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8001 63-1 80071 5 bp Feature: gene Location: 1801464-1801694 bp Ori: AFL73637.1 Feature: domain Description: PSK_trans_fac Location: 1801467-1801689 bp Feature: domain Description: PSK_trans_fac Location: 1 801 467-1 801 689 bp Feature: gene Location: 1802946-1803992 bp Ori: AFL73638.1 Feature: domain Description: YraQ Location: 1803090-1803987 bp Feature: domain Description: YraQ Location: 1 803090-1 803987 bp Feature: gene Location: 3084711-3085586 bp Ori: AFL74726.1 Feature: domain Description: TIR_2 Location: 3084726-3085089 bp Feature: domain Description: TIR_2 Location: 3084726-3085089 bp Feature: gene Location: 3085942-3086175 bp Ori: AFL74727.1 Feature: domain Description: VagC Location: 3085963-3086149 bp Feature: domain Description: VagC Location: 3085963-30861 49 bp Feature: gene Location: 3086490-3087926 bp Ori: AFL74728.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3086880-3087540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3086880-3087540 bp Feature: domain Description: GIIM Note: maturase Location: 3087609-3087825 bp Feature: domain Description: GIIM Note: maturase Location: 3087609-3087825 bp Feature: gene Location: 3088479-3088691 bp Ori: AFL74729.1 Feature: domain Description: HicB Location: 3088488-3088653 bp Feature: domain Description: HicB Location: 3088488-3088653 bp Feature: gene Location: 3088688-3088873 bp Ori: AFL74730.1 Feature: domain Description: HicA_toxin Location: 3088700-3088862 bp Feature: domain Description: HicA_toxin Location: 3088700-3088862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_MtVapC20-like (cd18680), RVT-Retrons, HTH_XRE (smart00530), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), ABC_ATPase (pfam09818), PSK_trans_fac (pfam07704), YraQ (COG0701), TIR_2 (pfam13676), VagC (COG4456)
RVT-GII, GIIM (pfam08388), HicB (pfam05534), HicA_toxin (pfam07927)