myRT

myRT report for GCA_000230555.1_ASM23055v1

Download annotations/find similar RTs

Seq: CP003075.1 Pelagibacterium halotolerans B2, complete genome (3944837 bp)
Overview 1 RT 1: 2828622-2832499 bp 2 RT 2: 3602694-3608534 bp Neighborhood of RT #1 [2828622, 2832499] RVT-GII group_II_RT_mat HNHc SSB_OBF Neighborhood of RT #2 [3602694, 3608680] COG5340 RVT-Retrons DUF3800 Arm-DNA-bind_3 XerC Feature: gene Location: 2828622-2828738 bp Feature: gene Location: 2828985-2829146 bp Feature: gene Location: 2829302-2831101 bp Ori: AEQ52843.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829500-2830319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829500-283031 9 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2830541-2830670 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2830541 -2830670 bp Feature: domain Description: HNHc Note: nucleases Location: 2830871-2831024 bp Feature: domain Description: HNHc Note: nucleases Location: 2830871 -2831 024 bp Feature: gene Location: 2831810-2832208 bp Ori: AEQ52844.1 Feature: domain Description: SSB_OBF Location: 2831825-2832146 bp Feature: domain Description: SSB_OBF Location: 2831 825-28321 46 bp Feature: gene Location: 2832386-2832499 bp Feature: gene Location: 3602694-3603248 bp Ori: AEQ53615.1 Feature: domain Description: COG5340 Location: 3602733-3603087 bp Feature: domain Description: COG5340 Location: 3602733-3603087 bp Feature: gene Location: 3603510-3604730 bp Feature: gene Location: 3604907-3606061 bp Ori: AEQ53617.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3605162-3605771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36051 62-3605771 bp Feature: gene Location: 3606139-3607257 bp Ori: AEQ53618.1 Feature: domain Description: DUF3800 Location: 3606208-3607045 bp Feature: domain Description: DUF3800 Location: 3606208-3607045 bp Feature: gene Location: 3607358-3608680 bp Ori: AEQ53619.1 Feature: domain Description: Arm-DNA-bind_3 Location: 3607370-3607628 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3607370-3607628 bp Feature: domain Description: XerC Location: 3607721-3608534 bp Feature: domain Description: XerC Location: 3607721 -3608534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), SSB_OBF (cd04496), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-Retrons, DUF3800 (pfam12686), Arm-DNA-bind_3 (pfam13356), XerC (COG4973)