myRT

myRT report for GCA_000235605.1_ASM23560v1

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Seq: CP003108.1 Desulfosporosinus orientis DSM 765, complete genome (5863081 bp)
Overview 1 RT 1: 153217-155693 bp 2 RT 2: 316978-320609 bp 3 RT 3: 604569-607863 bp 4 RT 4: 758598-763264 bp 5 RT 5: 967437-972350 bp 6 RT 6: 2061257-2066483 bp 7 RT 7: 3559609-3565750 bp Neighborhood of RT #1 [153217, 155827] RVT-GII DDE_Tnp_1_6 Neighborhood of RT #2 [316978, 320611] Collagen KOG3546 Collagen RVT-GII RVT-GII COG3666 Neighborhood of RT #3 [604569, 607863] RVT-GII GIIM IclR Neighborhood of RT #4 [758598, 763293] HTH_28 HTH_28 HTH_28 PHA02517 RVT_N RVT-GII GIIM PHA02517 SanA Neighborhood of RT #5 [967437, 972409] RVT-UG14 DUF1837 Neighborhood of RT #6 [2061257, 2066527] RVT-GII RVT-GII RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp CxxC_CxxC_SSSS Neighborhood of RT #7 [3559609, 3565758] Dob10 Dob10 GIIM RVT-GII RVT-GII RVT-GII rubredoxin Feature: gene Location: 153217-153570 bp Feature: gene Location: 153607-153774 bp Feature: gene Location: 153792-154880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154134-154752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 541 34-1 54752 bp Feature: gene Location: 154977-155189 bp Feature: gene Location: 155249-155827 bp Feature: domain Description: DDE_Tnp_1_6 Location: 155342-155693 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 55342-1 55693 bp Feature: gene Location: 316978-318555 bp Feature: domain Description: Collagen Location: 317341-317515 bp Feature: domain Description: Collagen Location: 31 7341 -31 751 5 bp Feature: domain Description: KOG3546 Location: 317521-317827 bp Feature: domain Description: KOG3546 Location: 31 7521 -31 7827 bp Feature: domain Description: Collagen Location: 317971-318145 bp Feature: domain Description: Collagen Location: 31 7971 -31 81 45 bp Feature: gene Location: 318700-318855 bp Feature: gene Location: 319089-319565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319371-319533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 9371 -31 9533 bp Feature: gene Location: 319593-319802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319614-319773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 961 4-31 9773 bp Feature: gene Location: 319949-320131 bp Feature: gene Location: 320363-320611 bp Feature: domain Description: COG3666 Location: 320366-320609 bp Feature: domain Description: COG3666 Location: 320366-320609 bp Feature: gene Location: 604569-604865 bp Feature: gene Location: 605248-605562 bp Feature: gene Location: 605728-606261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605734-605872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605734-605872 bp Feature: domain Description: GIIM Note: maturase Location: 605953-606172 bp Feature: domain Description: GIIM Note: maturase Location: 605953-6061 72 bp Feature: gene Location: 606783-607556 bp Feature: domain Description: IclR Location: 606813-607548 bp Feature: domain Description: IclR Location: 60681 3-607548 bp Feature: gene Location: 607705-607863 bp Feature: gene Location: 758598-759281 bp Feature: domain Description: HTH_28 Location: 758631-758763 bp Feature: domain Description: HTH_28 Location: 758631 -758763 bp Feature: domain Description: HTH_28 Location: 758802-758949 bp Feature: domain Description: HTH_28 Location: 758802-758949 bp Feature: domain Description: HTH_28 Location: 758994-759144 bp Feature: domain Description: HTH_28 Location: 758994-7591 44 bp Feature: gene Location: 759443-759916 bp Feature: domain Description: PHA02517 Location: 759464-759896 bp Feature: domain Description: PHA0251 7 Location: 759464-759896 bp Feature: gene Location: 760431-761984 bp Feature: domain Description: RVT_N Location: 760518-760758 bp Feature: domain Description: RVT_N Location: 76051 8-760758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760806-761466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760806-761 466 bp Feature: domain Description: GIIM Note: maturase Location: 761517-761754 bp Feature: domain Description: GIIM Note: maturase Location: 761 51 7-761 754 bp Feature: gene Location: 761917-762294 bp Feature: domain Description: PHA02517 Location: 762022-762262 bp Feature: domain Description: PHA0251 7 Location: 762022-762262 bp Feature: gene Location: 762616-763293 bp Feature: domain Description: SanA Location: 762631-763264 bp Feature: domain Description: SanA Location: 762631 -763264 bp Feature: gene Location: 967437-967625 bp Feature: gene Location: 967672-967884 bp Feature: gene Location: 968422-969978 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 968767-969133 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 968767-9691 33 bp Feature: gene Location: 970074-970271 bp Feature: gene Location: 971492-972409 bp Feature: domain Description: DUF1837 Location: 971633-972350 bp Feature: domain Description: DUF1 837 Location: 971 633-972350 bp Feature: gene Location: 2061257-2061520 bp Feature: gene Location: 2061611-2062675 bp Feature: gene Location: 2063297-2063683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063501-2063681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063501 -2063681 bp Feature: gene Location: 2063687-2063962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063696-2063951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063696-2063951 bp Feature: gene Location: 2064044-2064541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2064047-2064158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2064047-20641 58 bp Feature: domain Description: GIIM Note: maturase Location: 2064239-2064452 bp Feature: domain Description: GIIM Note: maturase Location: 2064239-2064452 bp Feature: gene Location: 2064715-2065023 bp Feature: gene Location: 2065361-2066527 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2065382-2065649 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2065382-2065649 bp Feature: domain Description: Y2_Tnp Location: 2065775-2066324 bp Feature: domain Description: Y2_Tnp Location: 2065775-2066324 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 2066399-2066483 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 2066399-2066483 bp Feature: gene Location: 3559609-3561900 bp Feature: domain Description: Dob10 Location: 3559675-3561145 bp Feature: domain Description: Dob1 0 Location: 3559675-3561 1 45 bp Feature: domain Description: Dob10 Location: 3561274-3561877 bp Feature: domain Description: Dob1 0 Location: 3561 274-3561 877 bp Feature: gene Location: 3562007-3562345 bp Feature: domain Description: GIIM Note: maturase Location: 3562016-3562190 bp Feature: domain Description: GIIM Note: maturase Location: 356201 6-35621 90 bp Feature: gene Location: 3562353-3562733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3562359-3562641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3562359-3562641 bp Feature: gene Location: 3562828-3562980 bp Feature: gene Location: 3563280-3564227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3563535-3564129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3563535-35641 29 bp Feature: gene Location: 3564273-3564449 bp Feature: gene Location: 3564708-3565145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3564903-3565134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3564903-35651 34 bp Feature: gene Location: 3565227-3565427 bp Feature: gene Location: 3565582-3565758 bp Feature: domain Description: rubredoxin Location: 3565606-3565750 bp Feature: domain Description: rubredoxin Location: 3565606-3565750 bp Sorry, your browser 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Associated domains:myRT RVT-GII, DDE_Tnp_1_6 (pfam13751), Collagen (pfam01391), KOG3546 (KOG3546, Collagens (type XV) ), COG3666 (Transposase ), GIIM (pfam08388), IclR (pfam01614), HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655)
SanA (COG2949), RVT-UG14, DUF1837 (pfam08878), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), CxxC_CxxC_SSSS (TIGR02605), Dob10 (COG4581), rubredoxin (cd00730)