myRT

myRT report for GCA_000236605.1_ASM23660v1

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Seq: CP003125.1 Geobacillus thermoleovorans CCB_US3_UF5, complete genome (3596620 bp)
Overview 1 RT 1: 434766-440124 bp 2 RT 2: 890704-897010 bp 3 RT 3: 1029640-1033894 bp 4 RT 4: 1376935-1384114 bp 5 RT 5: 1439140-1442372 bp 6 RT 6: 1581298-1587524 bp 7 RT 7: 1725170-1728972 bp 8 RT 8: 1949606-1957296 bp 9 RT 9: 2608216-2614391 bp 10 RT 10: 3156342-3160873 bp Neighborhood of RT #1 [434766, 440124] DDE_Tnp_1 RVT-GII GIIM AlsT Neighborhood of RT #2 [890704, 897024] carB PRK00779 RVT-GII GIIM YjzC Neighborhood of RT #3 [1029640, 1033920] spore_sigI RsgI_N RVT-GII GIIM SASP PBP2_UgpB Neighborhood of RT #4 [1376935, 1384116] PRK00549 recA RVT-GII HNHc recA RNase_Y Neighborhood of RT #5 [1439140, 1442372] DUF2564 RVT-GII GIIM CspC Neighborhood of RT #6 [1581298, 1587526] PRK07740 PCYCGC RVT-GII GIIM FhuD UPF0236 Neighborhood of RT #7 [1725170, 1729055] RVT-GII GIIM BaeS MFS_FsR Neighborhood of RT #8 [1949606, 1957313] YdjM narG RVT-GII GIIM narG narH Neighborhood of RT #9 [2608216, 2614408] spore_ytvI DedA RVT-GII GIIM gltP PRK05803 Neighborhood of RT #10 [3156342, 3160873] TRX_reduct HTH_psq RVT-GII GIIM TPR TPR Feature: gene Location: 434766-435899 bp Ori: AEV17774.1 Feature: domain Description: DDE_Tnp_1 Location: 435096-435726 bp Feature: domain Description: DDE_Tnp_1 Location: 435096-435726 bp Feature: gene Location: 435965-436129 bp Feature: gene Location: 436730-437989 bp Ori: AEV17776.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436928-437546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436928-437546 bp Feature: domain Description: GIIM Note: maturase Location: 437594-437807 bp Feature: domain Description: GIIM Note: maturase Location: 437594-437807 bp Feature: gene Location: 438398-439867 bp Ori: AEV17777.1 Feature: domain Description: AlsT Location: 438404-439769 bp Feature: domain Description: AlsT Location: 438404-439769 bp Feature: gene Location: 439990-440124 bp Feature: gene Location: 890704-893832 bp Ori: AEV18270.1 Feature: domain Description: carB Location: 890707-893809 bp Feature: domain Description: carB Location: 890707-893809 bp Feature: gene Location: 893829-894767 bp Ori: AEV18271.1 Feature: domain Description: PRK00779 Location: 893853-894762 bp Feature: domain Description: PRK00779 Location: 893853-894762 bp Feature: gene Location: 895358-896617 bp Ori: AEV18272.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895556-896174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895556-8961 74 bp Feature: domain Description: GIIM Note: maturase Location: 896222-896435 bp Feature: domain Description: GIIM Note: maturase Location: 896222-896435 bp Feature: gene Location: 896654-896812 bp Feature: gene Location: 896845-897024 bp Ori: AEV18274.1 Feature: domain Description: YjzC Location: 896848-897010 bp Feature: domain Description: YjzC Location: 896848-89701 0 bp Feature: gene Location: 1029640-1030398 bp Ori: AEV18421.1 Feature: domain Description: spore_sigI Location: 1029709-1030378 bp Feature: domain Description: spore_sigI Location: 1 029709-1 030378 bp Feature: gene Location: 1030395-1031462 bp Ori: AEV18422.1 Feature: domain Description: RsgI_N Location: 1030416-1030566 bp Feature: domain Description: RsgI_N Location: 1 03041 6-1 030566 bp Feature: gene Location: 1032037-1033296 bp Ori: AEV18423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032235-1032853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 032235-1 032853 bp Feature: domain Description: GIIM Note: maturase Location: 1032901-1033114 bp Feature: domain Description: GIIM Note: maturase Location: 1 032901 -1 0331 1 4 bp Feature: gene Location: 1033362-1033562 bp Ori: AEV18424.1 Feature: domain Description: SASP Location: 1033380-1033542 bp Feature: domain Description: SASP Location: 1 033380-1 033542 bp Feature: gene Location: 1033687-1033920 bp Ori: AEV18425.1 Feature: domain Description: PBP2_UgpB Location: 1033690-1033894 bp Feature: domain Description: PBP2_UgpB Location: 1 033690-1 033894 bp Feature: gene Location: 1376935-1378179 bp Ori: AEV18802.1 Feature: domain Description: PRK00549 Location: 1376941-1378168 bp Feature: domain Description: PRK00549 Location: 1 376941 -1 3781 68 bp Feature: gene Location: 1378358-1378663 bp Ori: AEV18803.1 Feature: domain Description: recA Location: 1378364-1378649 bp Feature: domain Description: recA Location: 1 378364-1 378649 bp Feature: gene Location: 1379566-1381296 bp Ori: AEV18804.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379737-1380448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379737-1 380448 bp Feature: domain Description: HNHc Note: nucleases Location: 1381045-1381210 bp Feature: domain Description: HNHc Note: nucleases Location: 1 381 045-1 381 21 0 bp Feature: gene Location: 1381342-1382184 bp Ori: AEV18805.1 Feature: domain Description: recA Location: 1381432-1382143 bp Feature: domain Description: recA Location: 1 381 432-1 3821 43 bp Feature: gene Location: 1382560-1384116 bp Ori: AEV18806.1 Feature: domain Description: RNase_Y Location: 1382578-1384114 bp Feature: domain Description: RNase_Y Location: 1 382578-1 3841 1 4 bp Feature: gene Location: 1439140-1439355 bp Feature: gene Location: 1439627-1439896 bp Ori: AEV18868.1 Feature: domain Description: DUF2564 Location: 1439660-1439894 bp Feature: domain Description: DUF2564 Location: 1 439660-1 439894 bp Feature: gene Location: 1440543-1441802 bp Ori: AEV18869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440741-1441359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 440741 -1 441 359 bp Feature: domain Description: GIIM Note: maturase Location: 1441407-1441620 bp Feature: domain Description: GIIM Note: maturase Location: 1 441 407-1 441 620 bp Feature: gene Location: 1441912-1442112 bp Ori: AEV18870.1 Feature: domain Description: CspC Location: 1441915-1442107 bp Feature: domain Description: CspC Location: 1 441 91 5-1 4421 07 bp Feature: gene Location: 1442202-1442372 bp Feature: gene Location: 1581298-1582026 bp Ori: AEV19005.1 Feature: domain Description: PRK07740 Location: 1581307-1582024 bp Feature: domain Description: PRK07740 Location: 1 581 307-1 582024 bp Feature: gene Location: 1582190-1582681 bp Ori: AEV19006.1 Feature: domain Description: PCYCGC Location: 1582226-1582673 bp Feature: domain Description: PCYCGC Location: 1 582226-1 582673 bp Feature: gene Location: 1583642-1584901 bp Ori: AEV19007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583840-1584458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 583840-1 584458 bp Feature: domain Description: GIIM Note: maturase Location: 1584506-1584719 bp Feature: domain Description: GIIM Note: maturase Location: 1 584506-1 58471 9 bp Feature: gene Location: 1584986-1585957 bp Ori: AEV19008.1 Feature: domain Description: FhuD Location: 1585160-1585925 bp Feature: domain Description: FhuD Location: 1 5851 60-1 585925 bp Feature: gene Location: 1586162-1587526 bp Ori: AEV19009.1 Feature: domain Description: UPF0236 Location: 1586168-1587524 bp Feature: domain Description: UPF0236 Location: 1 5861 68-1 587524 bp Feature: gene Location: 1725170-1725307 bp Feature: gene Location: 1725306-1725512 bp Feature: gene Location: 1726122-1727381 bp Ori: AEV19177.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1726320-1726938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 726320-1 726938 bp Feature: domain Description: GIIM Note: maturase Location: 1726986-1727199 bp Feature: domain Description: GIIM Note: maturase Location: 1 726986-1 7271 99 bp Feature: gene Location: 1727456-1728748 bp Ori: AEV19178.1 Feature: domain Description: BaeS Location: 1727933-1728719 bp Feature: domain Description: BaeS Location: 1 727933-1 72871 9 bp Feature: gene Location: 1728789-1729055 bp Ori: AEV19179.1 Feature: domain Description: MFS_FsR Location: 1728876-1728972 bp Feature: domain Description: MFS_FsR Location: 1 728876-1 728972 bp Feature: gene Location: 1949606-1950109 bp Ori: AEV19430.1 Feature: domain Description: YdjM Location: 1949621-1950053 bp Feature: domain Description: YdjM Location: 1 949621 -1 950053 bp Feature: gene Location: 1950281-1953697 bp Ori: AEV19431.1 Feature: domain Description: narG Location: 1950299-1953686 bp Feature: domain Description: narG Location: 1 950299-1 953686 bp Feature: gene Location: 1953749-1955008 bp Ori: AEV19432.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1953947-1954565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 953947-1 954565 bp Feature: domain Description: GIIM Note: maturase Location: 1954613-1954826 bp Feature: domain Description: GIIM Note: maturase Location: 1 95461 3-1 954826 bp Feature: gene Location: 1955549-1955854 bp Ori: AEV19433.1 Feature: domain Description: narG Location: 1955567-1955849 bp Feature: domain Description: narG Location: 1 955567-1 955849 bp Feature: gene Location: 1955844-1957313 bp Ori: AEV19434.1 Feature: domain Description: narH Location: 1955847-1957296 bp Feature: domain Description: narH Location: 1 955847-1 957296 bp Feature: gene Location: 2608216-2609241 bp Ori: AEV20157.1 Feature: domain Description: spore_ytvI Location: 2608231-2609221 bp Feature: domain Description: spore_ytvI Location: 2608231 -2609221 bp Feature: gene Location: 2609322-2609933 bp Ori: AEV20158.1 Feature: domain Description: DedA Location: 2609346-2609910 bp Feature: domain Description: DedA Location: 2609346-260991 0 bp Feature: gene Location: 2610077-2611336 bp Ori: AEV20159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2610275-2610893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 0275-261 0893 bp Feature: domain Description: GIIM Note: maturase Location: 2610941-2611154 bp Feature: domain Description: GIIM Note: maturase Location: 261 0941 -261 1 1 54 bp Feature: gene Location: 2612229-2613497 bp Ori: AEV20160.1 Feature: domain Description: gltP Location: 2612238-2613489 bp Feature: domain Description: gltP Location: 261 2238-261 3489 bp Feature: gene Location: 2613695-2614408 bp Ori: AEV20161.1 Feature: domain Description: PRK05803 Location: 2613704-2614391 bp Feature: domain Description: PRK05803 Location: 261 3704-261 4391 bp Feature: gene Location: 3156342-3157298 bp Ori: AEV20737.1 Feature: domain Description: TRX_reduct Location: 3156366-3157257 bp Feature: domain Description: TRX_reduct Location: 31 56366-31 57257 bp Feature: gene Location: 3157374-3158015 bp Ori: AEV20738.1 Feature: domain Description: HTH_psq Location: 3157884-3157992 bp Feature: domain Description: HTH_psq Location: 31 57884-31 57992 bp Feature: gene Location: 3158102-3159361 bp Ori: AEV20739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3158300-3158918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 58300-31 5891 8 bp Feature: domain Description: GIIM Note: maturase Location: 3158966-3159179 bp Feature: domain Description: GIIM Note: maturase Location: 31 58966-31 591 79 bp Feature: gene Location: 3159882-3160733 bp Ori: AEV20740.1 Feature: domain Description: TPR Location: 3159957-3160233 bp Feature: domain Description: TPR Location: 31 59957-31 60233 bp Feature: domain Description: TPR Location: 3160344-3160605 bp Feature: domain Description: TPR Location: 31 60344-31 60605 bp Feature: gene Location: 3160718-3160873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), AlsT (COG1115), carB (PRK12815), PRK00779 (ornithine carbamoyltransferase; Provisional), YjzC (pfam14168), spore_sigI (TIGR02895), RsgI_N (pfam12791), SASP (pfam00269)
PBP2_UgpB (cd14748), PRK00549 (competence damage-inducible protein A; Provisional), recA (PRK09519), HNHc (smart00507), RNase_Y (TIGR03319), DUF2564 (pfam10819), CspC (COG1278), PRK07740 (hypothetical protein; Provisional), PCYCGC (pfam13798), FhuD (cd01146)
UPF0236 (pfam06782), BaeS (COG0642), MFS_FsR (cd17478), YdjM (pfam04307), narG (TIGR01580), narH (TIGR01660), spore_ytvI (TIGR02872), DedA (COG0586), gltP (PRK11283), PRK05803 (RNA polymerase sporulation sigma factor SigK)
TRX_reduct (TIGR01292), HTH_psq (pfam05225), TPR (smart00028)