myRT

myRT report for GCA_000237085.1_ASM23708v1

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Seq: CP003065.1 [Clostridium] clariflavum DSM 19732 chromosome, complete genome (4897678 bp)
Overview 1 RT 1: 184183-190513 bp 2 RT 2: 1023684-1031827 bp 3 RT 3: 1928473-1935006 bp 4 RT 4: 3691008-3698180 bp 5 RT 5: 3705461-3708122 bp 6 RT 6: 4237927-4242896 bp 7 RT 7: 4277839-4284799 bp 8 RT 8: 4318767-4324475 bp 9 RT 9: 4862813-4874866 bp Neighborhood of RT #1 [184183, 190599] GGDEF SpoOE-like RVT-Retrons DndB COG3440 Neighborhood of RT #2 [1023684, 1031868] Cu_amine_oxidN1 Cu_amine_oxidN1 RVT-GII GIIM TnpB_IS66 Neighborhood of RT #3 [1928473, 1935020] CaiD KOG1552 RVT-GII GIIM HTH_17 HsdM Neighborhood of RT #4 [3691008, 3698299] YgiQ HpnR_B12_rSAM HpnR_B12_rSAM RVT-UG26 HpnR_B12_rSAM HpnR_B12_rSAM Neighborhood of RT #5 [3705461, 3708214] DUF2220 HTH_Hin_like RVT-GII GIIM Neighborhood of RT #6 [4237927, 4242896] DUF4367 RpoE RVT-GII GIIM PRiA4_ORF3 Neighborhood of RT #7 [4277839, 4284810] PHA02517 HTH_Tnp_1 RVT-GII GIIM RVT-GII GIIM RpoE Neighborhood of RT #8 [4318767, 4324477] DDE_Tnp_1_assoc YhhI YhhI RVT-GII GIIM zf_CopZ Fer2_BFD PRK14786 Neighborhood of RT #9 [4862813, 4874880] CBS_pair_HRP1_like BID_1 Hydrolase_4 PGAP1 RVT-GII Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like CBM_2 Type_I_cohesin_like CBM_2 Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Type_I_cohesin_like Feature: gene Location: 184183-185073 bp Ori: AEV66927.1 Feature: domain Description: GGDEF Location: 184447-184891 bp Feature: domain Description: GGDEF Location: 1 84447-1 84891 bp Feature: domain Description: SpoOE-like Location: 184936-185059 bp Feature: domain Description: SpoOE-like Location: 1 84936-1 85059 bp Feature: gene Location: 185698-186600 bp Feature: gene Location: 186801-187979 bp Ori: AEV66929.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186960-187518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 86960-1 8751 8 bp Feature: gene Location: 188219-189286 bp Ori: AEV66930.1 Feature: domain Description: DndB Location: 188243-189260 bp Feature: domain Description: DndB Location: 1 88243-1 89260 bp Feature: gene Location: 189748-190599 bp Ori: AEV66931.1 Feature: domain Description: COG3440 Location: 190339-190513 bp Feature: domain Description: COG3440 Location: 1 90339-1 9051 3 bp Feature: gene Location: 1023684-1026296 bp Feature: gene Location: 1026382-1027329 bp Ori: AEV67571.1 Feature: domain Description: Cu_amine_oxidN1 Location: 1026463-1026664 bp Feature: domain Description: Cu_amine_oxidN1 Location: 1 026463-1 026664 bp Feature: domain Description: Cu_amine_oxidN1 Location: 1026736-1026943 bp Feature: domain Description: Cu_amine_oxidN1 Location: 1 026736-1 026943 bp Feature: gene Location: 1028125-1029369 bp Ori: AEV67572.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028329-1028986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028329-1 028986 bp Feature: domain Description: GIIM Note: maturase Location: 1029067-1029277 bp Feature: domain Description: GIIM Note: maturase Location: 1 029067-1 029277 bp Feature: gene Location: 1029561-1029845 bp Feature: gene Location: 1031515-1031868 bp Ori: AEV67574.1 Feature: domain Description: TnpB_IS66 Location: 1031542-1031827 bp Feature: domain Description: TnpB_IS66 Location: 1 031 542-1 031 827 bp Feature: gene Location: 1928473-1929222 bp Ori: AEV68305.1 Feature: domain Description: CaiD Location: 1928476-1929169 bp Feature: domain Description: CaiD Location: 1 928476-1 9291 69 bp Feature: gene Location: 1929990-1930697 bp Ori: AEV68306.1 Feature: domain Description: KOG1552 Location: 1930179-1930689 bp Feature: domain Description: KOG1 552 Location: 1 9301 79-1 930689 bp Feature: gene Location: 1931511-1932809 bp Ori: AEV68307.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931811-1932450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 81 1 -1 932450 bp Feature: domain Description: GIIM Note: maturase Location: 1932528-1932750 bp Feature: domain Description: GIIM Note: maturase Location: 1 932528-1 932750 bp Feature: gene Location: 1933237-1933413 bp Ori: AEV68308.1 Feature: domain Description: HTH_17 Location: 1933246-1933369 bp Feature: domain Description: HTH_1 7 Location: 1 933246-1 933369 bp Feature: gene Location: 1933428-1935020 bp Ori: AEV68309.1 Feature: domain Description: HsdM Location: 1933473-1935006 bp Feature: domain Description: HsdM Location: 1 933473-1 935006 bp Feature: gene Location: 3691008-3692318 bp Ori: AEV69675.1 Feature: domain Description: YgiQ Location: 3691185-3692187 bp Feature: domain Description: YgiQ Location: 3691 1 85-36921 87 bp Feature: gene Location: 3692402-3693682 bp Ori: AEV69676.1 Feature: domain Description: HpnR_B12_rSAM Location: 3692405-3692723 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 3692405-3692723 bp Feature: domain Description: HpnR_B12_rSAM Location: 3692834-3693545 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 3692834-3693545 bp Feature: gene Location: 3693783-3695009 bp Ori: AEV69677.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 3693981-3694599 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 3693981 -3694599 bp Feature: gene Location: 3695302-3696660 bp Ori: AEV69678.1 Feature: domain Description: HpnR_B12_rSAM Location: 3695305-3696535 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 3695305-3696535 bp Feature: gene Location: 3696971-3698299 bp Ori: AEV69679.1 Feature: domain Description: HpnR_B12_rSAM Location: 3696992-3698180 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 3696992-36981 80 bp Feature: gene Location: 3705461-3706507 bp Ori: AEV69683.1 Feature: domain Description: DUF2220 Location: 3706046-3706286 bp Feature: domain Description: DUF2220 Location: 3706046-3706286 bp Feature: gene Location: 3706680-3706820 bp Ori: AEV69684.1 Feature: domain Description: HTH_Hin_like Location: 3706731-3706815 bp Feature: domain Description: HTH_Hin_like Location: 3706731 -370681 5 bp Feature: gene Location: 3706970-3708214 bp Ori: AEV69685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3707174-3707831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37071 74-3707831 bp Feature: domain Description: GIIM Note: maturase Location: 3707912-3708122 bp Feature: domain Description: GIIM Note: maturase Location: 370791 2-37081 22 bp Feature: gene Location: 4237927-4238622 bp Ori: AEV70083.1 Feature: domain Description: DUF4367 Location: 4238296-4238593 bp Feature: domain Description: DUF4367 Location: 4238296-4238593 bp Feature: gene Location: 4238612-4239154 bp Ori: AEV70084.1 Feature: domain Description: RpoE Location: 4238651-4239143 bp Feature: domain Description: RpoE Location: 4238651 -42391 43 bp Feature: gene Location: 4239655-4240953 bp Ori: AEV70085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239955-4240594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239955-4240594 bp Feature: domain Description: GIIM Note: maturase Location: 4240672-4240894 bp Feature: domain Description: GIIM Note: maturase Location: 4240672-4240894 bp Feature: gene Location: 4241674-4242318 bp Ori: AEV70086.1 Feature: domain Description: PRiA4_ORF3 Location: 4241680-4242268 bp Feature: domain Description: PRiA4_ORF3 Location: 4241 680-4242268 bp Feature: gene Location: 4242324-4242896 bp Feature: gene Location: 4277839-4278582 bp Ori: AEV70109.1 Feature: domain Description: PHA02517 Location: 4277857-4278571 bp Feature: domain Description: PHA0251 7 Location: 4277857-4278571 bp Feature: gene Location: 4278741-4279049 bp Ori: AEV70110.1 Feature: domain Description: HTH_Tnp_1 Location: 4278747-4278975 bp Feature: domain Description: HTH_Tnp_1 Location: 4278747-4278975 bp Feature: gene Location: 4279507-4280805 bp Ori: AEV70111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4279807-4280446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4279807-4280446 bp Feature: domain Description: GIIM Note: maturase Location: 4280524-4280746 bp Feature: domain Description: GIIM Note: maturase Location: 4280524-4280746 bp Feature: gene Location: 4281408-4282706 bp Ori: AEV70112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4281708-4282347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4281 708-4282347 bp Feature: domain Description: GIIM Note: maturase Location: 4282425-4282647 bp Feature: domain Description: GIIM Note: maturase Location: 4282425-4282647 bp Feature: gene Location: 4283405-4284328 bp Feature: gene Location: 4284325-4284810 bp Ori: AEV70114.1 Feature: domain Description: RpoE Location: 4284364-4284799 bp Feature: domain Description: RpoE Location: 4284364-4284799 bp Feature: gene Location: 4318767-4319417 bp Feature: gene Location: 4319944-4320963 bp Ori: AEV70145.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 4319980-4320244 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 431 9980-4320244 bp Feature: domain Description: YhhI Location: 4320382-4320727 bp Feature: domain Description: YhhI Location: 4320382-4320727 bp Feature: domain Description: YhhI Location: 4320772-4320919 bp Feature: domain Description: YhhI Location: 4320772-432091 9 bp Feature: gene Location: 4321435-4322733 bp Ori: AEV70146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321735-4322374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321 735-4322374 bp Feature: domain Description: GIIM Note: maturase Location: 4322452-4322674 bp Feature: domain Description: GIIM Note: maturase Location: 4322452-4322674 bp Feature: gene Location: 4323370-4323855 bp Ori: AEV70147.1 Feature: domain Description: zf_CopZ Location: 4323445-4323628 bp Feature: domain Description: zf_CopZ Location: 4323445-4323628 bp Feature: domain Description: Fer2_BFD Location: 4323673-4323832 bp Feature: domain Description: Fer2_BFD Location: 4323673-4323832 bp Feature: gene Location: 4324013-4324477 bp Ori: AEV70148.1 Feature: domain Description: PRK14786 Location: 4324016-4324475 bp Feature: domain Description: PRK1 4786 Location: 432401 6-4324475 bp Feature: gene Location: 4862813-4863232 bp Ori: AEV70634.1 Feature: domain Description: CBS_pair_HRP1_like Location: 4862834-4863170 bp Feature: domain Description: CBS_pair_HRP1 _like Location: 4862834-48631 70 bp Feature: gene Location: 4863603-4864745 bp Ori: AEV70635.1 Feature: domain Description: BID_1 Location: 4863762-4864023 bp Feature: domain Description: BID_1 Location: 4863762-4864023 bp Feature: domain Description: Hydrolase_4 Location: 4864056-4864152 bp Feature: domain Description: Hydrolase_4 Location: 4864056-48641 52 bp Feature: domain Description: PGAP1 Location: 4864221-4864587 bp Feature: domain Description: PGAP1 Location: 4864221 -4864587 bp Feature: gene Location: 4866678-4867319 bp Ori: AEV70636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4866882-4867305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4866882-4867305 bp Feature: gene Location: 4868075-4871878 bp Ori: AEV70637.1 Feature: domain Description: Type_I_cohesin_like Location: 4868081-4868279 bp Feature: domain Description: Type_I_cohesin_like Location: 4868081 -4868279 bp Feature: domain Description: Type_I_cohesin_like Location: 4868363-4868741 bp Feature: domain Description: Type_I_cohesin_like Location: 4868363-4868741 bp Feature: domain Description: Type_I_cohesin_like Location: 4868825-4869203 bp Feature: domain Description: Type_I_cohesin_like Location: 4868825-4869203 bp Feature: domain Description: Type_I_cohesin_like Location: 4869284-4869662 bp Feature: domain Description: Type_I_cohesin_like Location: 4869284-4869662 bp Feature: domain Description: Type_I_cohesin_like Location: 4869746-4870124 bp Feature: domain Description: Type_I_cohesin_like Location: 4869746-48701 24 bp Feature: domain Description: Type_I_cohesin_like Location: 4870205-4870583 bp Feature: domain Description: Type_I_cohesin_like Location: 4870205-4870583 bp Feature: domain Description: Type_I_cohesin_like Location: 4870667-4871045 bp Feature: domain Description: Type_I_cohesin_like Location: 4870667-4871 045 bp Feature: domain Description: Type_I_cohesin_like Location: 4871126-4871504 bp Feature: domain Description: Type_I_cohesin_like Location: 4871 1 26-4871 504 bp Feature: domain Description: CBM_2 Location: 4871600-4871873 bp Feature: domain Description: CBM_2 Location: 4871 600-4871 873 bp Feature: gene Location: 4871875-4874880 bp Ori: AEV70638.1 Feature: domain Description: Type_I_cohesin_like Location: 4871977-4872370 bp Feature: domain Description: Type_I_cohesin_like Location: 4871 977-4872370 bp Feature: domain Description: CBM_2 Location: 4872481-4872757 bp Feature: domain Description: CBM_2 Location: 4872481 -4872757 bp Feature: domain Description: Type_I_cohesin_like Location: 4872859-4873237 bp Feature: domain Description: Type_I_cohesin_like Location: 4872859-4873237 bp Feature: domain Description: Type_I_cohesin_like Location: 4873318-4873696 bp Feature: domain Description: Type_I_cohesin_like Location: 487331 8-4873696 bp Feature: domain Description: Type_I_cohesin_like Location: 4873780-4874158 bp Feature: domain Description: Type_I_cohesin_like Location: 4873780-48741 58 bp Feature: domain Description: Type_I_cohesin_like Location: 4874239-4874617 bp Feature: domain Description: Type_I_cohesin_like Location: 4874239-487461 7 bp Feature: domain Description: Type_I_cohesin_like Location: 4874701-4874866 bp Feature: domain Description: Type_I_cohesin_like Location: 4874701 -4874866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGDEF (TIGR00254), SpoOE-like (pfam09388), RVT-Retrons, DndB (pfam14072), COG3440 (Predicted restriction endonuclease ), Cu_amine_oxidN1 (pfam07833), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), CaiD (COG1024)
KOG1552 (KOG1552, Predicted alpha/beta hydrolase ), HTH_17 (pfam12728), HsdM (COG0286), YgiQ (COG1032), HpnR_B12_rSAM (TIGR04367), RVT-UG26, DUF2220 (pfam09983), HTH_Hin_like (cd00569), DUF4367 (pfam14285), RpoE (COG3343)
PRiA4_ORF3 (pfam07929), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), zf_CopZ (pfam18423), Fer2_BFD (pfam04324), PRK14786 (lipoprotein signal peptidase; Provisional), CBS_pair_HRP1_like (cd04622), BID_1 (smart00634)
Hydrolase_4 (pfam12146), PGAP1 (pfam07819), Type_I_cohesin_like (cd08548), CBM_2 (smart01065)