myRT

myRT report for GCA_000237975.1_ASM23797v1

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Seq: CP003180.1 Sulfobacillus acidophilus DSM 10332 plasmid, complete sequence (84933 bp)
Overview 1 RT 1: 52986-68721 bp Neighborhood of RT #1 [52986, 68822] DEDD_Tnp_IS110 HHH_5 Transposase_20 PotE RVT-GII GIIM Transposase_mut IstB_IS21_ATP RVT-GII RVT-GII GIIM RVT-GII GIIM HTH_32 DDE_3 Feature: gene Location: 52986-54185 bp Ori: AEW07018.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 53004-53466 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 53004-53466 bp Feature: domain Description: HHH_5 Location: 53505-53580 bp Feature: domain Description: HHH_5 Location: 53505-53580 bp Feature: domain Description: Transposase_20 Location: 53787-54039 bp Feature: domain Description: Transposase_20 Location: 53787-54039 bp Feature: gene Location: 54581-56035 bp Ori: AEW07019.1 Feature: domain Description: PotE Location: 54614-55922 bp Feature: domain Description: PotE Location: 5461 4-55922 bp Feature: gene Location: 56758-58170 bp Ori: AEW07020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57103-57721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571 03-57721 bp Feature: domain Description: GIIM Note: maturase Location: 57775-58000 bp Feature: domain Description: GIIM Note: maturase Location: 57775-58000 bp Feature: gene Location: 58390-59004 bp Feature: gene Location: 59085-59681 bp Feature: gene Location: 60406-61671 bp Ori: AEW07023.1 Feature: domain Description: Transposase_mut Location: 60484-61543 bp Feature: domain Description: Transposase_mut Location: 60484-61 543 bp Feature: gene Location: 61673-62188 bp Ori: AEW07024.1 Feature: domain Description: IstB_IS21_ATP Location: 61988-62072 bp Feature: domain Description: IstB_IS21 _ATP Location: 61 988-62072 bp Feature: gene Location: 63780-64751 bp Ori: AEW07025.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64044-64731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64044-64731 bp Feature: gene Location: 64769-64978 bp Feature: gene Location: 65229-66473 bp Ori: AEW07027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65433-66090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65433-66090 bp Feature: domain Description: GIIM Note: maturase Location: 66171-66393 bp Feature: domain Description: GIIM Note: maturase Location: 661 71 -66393 bp Feature: gene Location: 66621-67073 bp Ori: AEW07028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66627-66699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66627-66699 bp Feature: domain Description: GIIM Note: maturase Location: 66768-66966 bp Feature: domain Description: GIIM Note: maturase Location: 66768-66966 bp Feature: gene Location: 67070-67723 bp Feature: gene Location: 67707-68822 bp Ori: AEW07030.1 Feature: domain Description: HTH_32 Location: 67869-68076 bp Feature: domain Description: HTH_32 Location: 67869-68076 bp Feature: domain Description: DDE_3 Location: 68358-68721 bp Feature: domain Description: DDE_3 Location: 68358-68721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), HHH_5 (pfam14520), Transposase_20 (pfam02371), PotE (COG0531), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), IstB_IS21_ATP (pfam08483), HTH_32 (pfam13565), DDE_3 (pfam13358)

Seq: CP003179.1 Sulfobacillus acidophilus DSM 10332, complete genome (3472898 bp)
Overview 1 RT 1: 395870-404392 bp 2 RT 2: 620726-623607 bp 3 RT 3: 2609011-2613531 bp 4 RT 4: 2970442-2974599 bp Neighborhood of RT #1 [395870, 404392] TrwC TraA_Ti TraA_Ti RVT-GII HNH Neighborhood of RT #2 [620726, 623636] RVT-GII KOG4768 HTH_Tnp_1 PHA02517 RVT-GII Neighborhood of RT #3 [2609011, 2613797] TadB RVT-GII GIIM SAF Neighborhood of RT #4 [2970442, 2974706] OmpR BaeS RVT-GII GIIM Feature: gene Location: 395870-396046 bp Feature: gene Location: 396148-398841 bp Ori: AEW03952.1 Feature: domain Description: TrwC Location: 396178-397027 bp Feature: domain Description: TrwC Location: 396178-39702 7 bp Feature: domain Description: TraA_Ti Location: 397105-397669 bp Feature: domain Description: TraA_Ti Location: 397105-397669 bp Feature: domain Description: TraA_Ti Location: 397828-398785 bp Feature: domain Description: TraA_Ti Location: 39782 8-398785 bp Feature: gene Location: 399871-401766 bp Ori: AEW03953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400189-400897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400189-400897 bp Feature: domain Description: HNH Note: nucleases Location: 401545-401680 bp Feature: domain Description: HNH Note: nucleases Location: 401545-401680 bp Feature: gene Location: 403215-403421 bp Feature: gene Location: 403517-404392 bp Feature: gene Location: 620726-621562 bp Ori: AEW04134.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620729-621041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 072 9-62 1041 bp Feature: domain Description: KOG4768 Location: 621179-621326 bp Feature: domain Description: KOG4768 Location: 62 1179-62 132 6 bp Feature: gene Location: 621646-621921 bp Ori: AEW04135.1 Feature: domain Description: HTH_Tnp_1 Location: 621649-621889 bp Feature: domain Description: HTH_Tnp_1 Location: 62 1649-62 1889 bp Feature: gene Location: 621921-622799 bp Ori: AEW04135.1 Feature: domain Description: PHA02517 Location: 622068-622746 bp Feature: domain Description: PHA02 517 Location: 62 2 068-62 2 746 bp Feature: gene Location: 622929-623636 bp Ori: AEW04136.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623202-623607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 32 02 -62 3607 bp Feature: gene Location: 2609011-2609703 bp Ori: AEW06106.1 Feature: domain Description: TadB Location: 2609074-2609653 bp Feature: domain Description: TadB Location: 2 609074-2 609653 bp Feature: gene Location: 2609703-2610338 bp Feature: gene Location: 2610412-2611725 bp Ori: AEW06108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2610658-2611276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 610658-2 6112 76 bp Feature: domain Description: GIIM Note: maturase Location: 2611330-2611543 bp Feature: domain Description: GIIM Note: maturase Location: 2 611330-2 611543 bp Feature: gene Location: 2612287-2613258 bp Feature: gene Location: 2613255-2613797 bp Ori: AEW06110.1 Feature: domain Description: SAF Location: 2613369-2613531 bp Feature: domain Description: SAF Location: 2 613369-2 613531 bp Feature: gene Location: 2970442-2971158 bp Ori: AEW06472.1 Feature: domain Description: OmpR Location: 2970472-2971123 bp Feature: domain Description: OmpR Location: 2 970472 -2 97112 3 bp Feature: gene Location: 2971155-2972651 bp Ori: AEW06473.1 Feature: domain Description: BaeS Location: 2971641-2972574 bp Feature: domain Description: BaeS Location: 2 971641-2 972 574 bp Feature: gene Location: 2973483-2974706 bp Ori: AEW06474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2973705-2974332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 973705-2 974332 bp Feature: domain Description: GIIM Note: maturase Location: 2974401-2974599 bp Feature: domain Description: GIIM Note: maturase Location: 2 974401-2 974599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrwC (pfam08751), TraA_Ti (TIGR02768), RVT-GII, HNH (pfam01844), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), TadB (COG4965), GIIM (pfam08388), SAF (smart00858)
OmpR (COG0745), BaeS (COG0642)