myRT

myRT report for GCA_000240185.2_ASM24018v2

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Seq: CP003200.1 Klebsiella pneumoniae subsp. pneumoniae HS11286, complete genome (5333942 bp)
Overview 1 RT 1: 1777704-1781873 bp 2 RT 2: 2114642-2120057 bp 3 RT 3: 2318650-2326078 bp 4 RT 4: 3489548-3497428 bp 5 RT 5: 3523567-3530050 bp 6 RT 6: 4054455-4059663 bp Neighborhood of RT #1 [1777704, 1781878] YbjK int RVT-GII DinI Neighborhood of RT #2 [2114642, 2120059] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [2318650, 2326078] RVT-GII PRK10597 Neighborhood of RT #4 [3489548, 3497433] DUF4917 AAA_15 RVT-Retrons a_cpa1 Neighborhood of RT #5 [3523567, 3530052] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #6 [4054455, 4059665] DUF5405 Phage_GPA RVT-GII DinI Feature: gene Location: 1777704-1778267 bp Ori: AEW60410.1 Feature: domain Description: YbjK Location: 1777710-1778247 bp Feature: domain Description: YbjK Location: 1 77771 0-1 778247 bp Feature: gene Location: 1778390-1779370 bp Ori: AEW60411.1 Feature: domain Description: int Location: 1778393-1779320 bp Feature: domain Description: int Location: 1 778393-1 779320 bp Feature: gene Location: 1779858-1781345 bp Ori: AEW60412.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780263-1780953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 780263-1 780953 bp Feature: gene Location: 1781446-1781634 bp Feature: gene Location: 1781645-1781878 bp Ori: AEW60414.1 Feature: domain Description: DinI Location: 1781687-1781873 bp Feature: domain Description: DinI Location: 1 781 687-1 781 873 bp Feature: gene Location: 2114642-2115778 bp Ori: AEW60760.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2114822-2115725 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 21 1 4822-21 1 5725 bp Feature: gene Location: 2115949-2116191 bp Ori: AEW60761.1 Feature: domain Description: DinI Location: 2116000-2116180 bp Feature: domain Description: DinI Location: 21 1 6000-21 1 61 80 bp Feature: gene Location: 2116806-2118293 bp Ori: AEW60762.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2117211-2117901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 721 1 -21 1 7901 bp Feature: gene Location: 2118372-2118791 bp Ori: AEW60763.1 Feature: domain Description: PRK10276 Location: 2118375-2118786 bp Feature: domain Description: PRK1 0276 Location: 21 1 8375-21 1 8786 bp Feature: gene Location: 2118794-2120059 bp Ori: AEW60764.1 Feature: domain Description: umuC Location: 2118797-2120057 bp Feature: domain Description: umuC Location: 21 1 8797-21 20057 bp Feature: gene Location: 2318650-2321673 bp Feature: gene Location: 2322412-2322621 bp Feature: gene Location: 2323071-2324558 bp Ori: AEW60992.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323476-2324166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323476-23241 66 bp Feature: gene Location: 2325143-2325391 bp Ori: AEW60993.1 Feature: domain Description: PRK10597 Location: 2325146-2325386 bp Feature: domain Description: PRK1 0597 Location: 23251 46-2325386 bp Feature: gene Location: 2325956-2326078 bp Feature: gene Location: 3489548-3490567 bp Ori: AEW62192.1 Feature: domain Description: DUF4917 Location: 3489608-3490532 bp Feature: domain Description: DUF491 7 Location: 3489608-3490532 bp Feature: gene Location: 3491966-3494212 bp Ori: AEW62193.1 Feature: domain Description: AAA_15 Location: 3491969-3492977 bp Feature: domain Description: AAA_1 5 Location: 3491 969-3492977 bp Feature: gene Location: 3494327-3495427 bp Ori: AEW62194.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3494510-3495038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 349451 0-3495038 bp Feature: gene Location: 3495637-3495780 bp Feature: gene Location: 3495799-3497433 bp Ori: AEW62196.1 Feature: domain Description: a_cpa1 Location: 3495826-3497428 bp Feature: domain Description: a_cpa1 Location: 3495826-3497428 bp Feature: gene Location: 3523567-3524625 bp Ori: AEW62224.1 Feature: domain Description: YccC Location: 3523573-3524611 bp Feature: domain Description: YccC Location: 3523573-352461 1 bp Feature: gene Location: 3524724-3525197 bp Ori: AEW62225.1 Feature: domain Description: PRK10016 Location: 3524727-3525186 bp Feature: domain Description: PRK1 001 6 Location: 3524727-35251 86 bp Feature: gene Location: 3525279-3526766 bp Ori: AEW62226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3525684-3526374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3525684-3526374 bp Feature: gene Location: 3527284-3528333 bp Ori: AEW62227.1 Feature: domain Description: dacD Location: 3527287-3528328 bp Feature: domain Description: dacD Location: 3527287-3528328 bp Feature: gene Location: 3528628-3530052 bp Ori: AEW62228.1 Feature: domain Description: SbcB Location: 3528634-3530050 bp Feature: domain Description: SbcB Location: 3528634-3530050 bp Feature: gene Location: 4054455-4054727 bp Ori: AEW62707.1 Feature: domain Description: DUF5405 Location: 4054473-4054716 bp Feature: domain Description: DUF5405 Location: 4054473-405471 6 bp Feature: gene Location: 4055149-4057212 bp Ori: AEW62708.1 Feature: domain Description: Phage_GPA Location: 4055419-4056361 bp Feature: domain Description: Phage_GPA Location: 405541 9-4056361 bp Feature: gene Location: 4057358-4058845 bp Ori: AEW62709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4057763-4058453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4057763-4058453 bp Feature: gene Location: 4059249-4059431 bp Feature: gene Location: 4059552-4059665 bp Ori: AEW62711.1 Feature: domain Description: DinI Location: 4059555-4059663 bp Feature: domain Description: DinI Location: 4059555-4059663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PRK10597 (DNA damage-inducible protein I; Provisional), DUF4917 (pfam16263), AAA_15 (pfam13175)
RVT-Retrons, a_cpa1 (TIGR00831), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), DUF5405 (pfam17399), Phage_GPA (pfam05840)

Seq: CP003224.1 Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2, complete sequence (111195 bp)
Overview 1 RT 1: 102286-105814 bp Neighborhood of RT #1 [102286, 105831] StbA RVT-GII PRK10276 Feature: gene Location: 102286-103257 bp Ori: AEW92201.1 Feature: domain Description: StbA Location: 102289-103234 bp Feature: domain Description: StbA Location: 102 2 89-1032 34 bp Feature: gene Location: 103388-103513 bp Feature: gene Location: 103506-104990 bp Ori: AEW92203.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103908-104598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103908-104598 bp Feature: gene Location: 105306-105422 bp Feature: gene Location: 105400-105831 bp Ori: AEW92205.1 Feature: domain Description: PRK10276 Location: 105451-105814 bp Feature: domain Description: PRK102 76 Location: 105451-105814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP003223.1 Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1, complete sequence (122799 bp)
Overview 1 RT 1: 16488-21675 bp Neighborhood of RT #1 [16488, 21675] INT_P4_C RVT-GII YafO_toxin Feature: gene Location: 16488-16868 bp Feature: gene Location: 16863-17966 bp Ori: AEW91928.1 Feature: domain Description: INT_P4_C Location: 17322-17871 bp Feature: domain Description: INT_P4_C Location: 173 22-17871 bp Feature: gene Location: 18053-19537 bp Ori: AEW91929.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18455-19145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18455-19145 bp Feature: gene Location: 20650-21060 bp Ori: AEW91930.1 Feature: domain Description: YafO_toxin Location: 20758-21043 bp Feature: domain Description: YafO_toxin Location: 20758-21043 bp Feature: gene Location: 21070-21675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-GII, YafO_toxin (pfam13957)