myRT

myRT report for GCA_000242455.3_ASM24245v3

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Seq: CP003364.1 Singulisphaera acidiphila DSM 18658, complete genome (9629675 bp)
Overview 1 RT 1: 2458368-2465971 bp 2 RT 2: 4267159-4279970 bp 3 RT 3: 4326215-4334940 bp 4 RT 4: 5443008-5452010 bp 5 RT 5: 5620983-5627896 bp 6 RT 6: 7266571-7272799 bp 7 RT 7: 7925995-7932939 bp 8 RT 8: 8441993-8451423 bp 9 RT 9: 8611509-8618900 bp 10 RT 10: 8865945-8872876 bp 11 RT 11: 9409487-9416557 bp Neighborhood of RT #1 [2458368, 2466786] DDE_Tnp_1_assoc YhhI YhhI PinE PinE Zn_ribbon_recom Recombinase HTH_MerR-trunc RVT-CRISPR-like phage_DnaB Neighborhood of RT #2 [4267159, 4280002] MGAT2 MGAT2 PT-HINT RVT-Retrons SWIM WGR_MMR_like WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #3 [4326215, 4335968] N_methyl SBP_bac_10 PepSY_TM RVT-GII GIIM Hepar_II_III Neighborhood of RT #4 [5443008, 5452010] AAA_16 HTH_ARSR TPR Beta-lactamase RVT-Retrons DprA_WH Neighborhood of RT #5 [5620983, 5627896] N_methyl SBP_bac_10 RVT-UG5 Neighborhood of RT #6 [7266571, 7272822] PEP_exosort RVT-GII GIIM AraC_N AraC CAD1 Neighborhood of RT #7 [7925995, 7932953] DUF4112 LTXXQ LTXXQ LTXXQ RVT-GII GIIM Ferritin_2 Ferritin_2 Neighborhood of RT #8 [8441993, 8451473] PSCyt2 PSD1 DUF1501 RVT-GII GIIM LytS LytS Neighborhood of RT #9 [8611509, 8618911] PAS_like RVT-GII GIIM OsmC Neighborhood of RT #10 [8865945, 8872920] ChoK-like ETNK_euk PLN02336 RVT-Retrons DAP2 Neighborhood of RT #11 [9409487, 9417024] fliG fliG YscJ_FliF fliF RVT-GII GIIM ArnT Feature: gene Location: 2458368-2459513 bp Ori: AGA26332.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 2458407-2458662 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 2458407-2458662 bp Feature: domain Description: YhhI Location: 2458812-2459028 bp Feature: domain Description: YhhI Location: 245881 2-2459028 bp Feature: domain Description: YhhI Location: 2459175-2459433 bp Feature: domain Description: YhhI Location: 24591 75-2459433 bp Feature: gene Location: 2459705-2461891 bp Ori: AGA26333.1 Feature: domain Description: PinE Location: 2459762-2459963 bp Feature: domain Description: PinE Location: 2459762-2459963 bp Feature: domain Description: PinE Location: 2460005-2460401 bp Feature: domain Description: PinE Location: 2460005-2460401 bp Feature: domain Description: Zn_ribbon_recom Location: 2460779-2460950 bp Feature: domain Description: Zn_ribbon_recom Location: 2460779-2460950 bp Feature: domain Description: Recombinase Location: 2461475-2461607 bp Feature: domain Description: Recombinase Location: 2461 475-2461 607 bp Feature: domain Description: HTH_MerR-trunc Location: 2461664-2461763 bp Feature: domain Description: HTH_MerR-trunc Location: 2461 664-2461 763 bp Feature: gene Location: 2463232-2464530 bp Ori: AGA26334.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2463631-2464189 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2463631 -24641 89 bp Feature: gene Location: 2464801-2466786 bp Ori: AGA26335.1 Feature: domain Description: phage_DnaB Location: 2465455-2465971 bp Feature: domain Description: phage_DnaB Location: 2465455-2465971 bp Feature: gene Location: 4267159-4267878 bp Ori: AGA27674.1 Feature: domain Description: MGAT2 Location: 4267174-4267348 bp Feature: domain Description: MGAT2 Location: 42671 74-4267348 bp Feature: domain Description: MGAT2 Location: 4267417-4267678 bp Feature: domain Description: MGAT2 Location: 426741 7-4267678 bp Feature: gene Location: 4268327-4270345 bp Ori: AGA27675.1 Feature: domain Description: PT-HINT Location: 4269896-4270268 bp Feature: domain Description: PT-HINT Location: 4269896-4270268 bp Feature: gene Location: 4270423-4271724 bp Ori: AGA27676.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4270885-4271509 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4270885-4271 509 bp Feature: gene Location: 4271730-4273610 bp Ori: AGA27677.1 Feature: domain Description: SWIM Location: 4273236-4273326 bp Feature: domain Description: SWIM Location: 4273236-4273326 bp Feature: domain Description: WGR_MMR_like Location: 4273416-4273590 bp Feature: domain Description: WGR_MMR_like Location: 427341 6-4273590 bp Feature: gene Location: 4273607-4280002 bp Ori: AGA27678.1 Feature: domain Description: WD40 Location: 4273973-4274210 bp Feature: domain Description: WD40 Location: 4273973-427421 0 bp Feature: domain Description: WD40 Location: 4274270-4274501 bp Feature: domain Description: WD40 Location: 4274270-4274501 bp Feature: domain Description: HEAT_2 Location: 4274561-4274804 bp Feature: domain Description: HEAT_2 Location: 4274561 -4274804 bp Feature: domain Description: HEAT_2 Location: 4275392-4275632 bp Feature: domain Description: HEAT_2 Location: 4275392-4275632 bp Feature: domain Description: HEAT_2 Location: 4276058-4276211 bp Feature: domain Description: HEAT_2 Location: 4276058-427621 1 bp Feature: domain Description: HEAT_2 Location: 4276223-4276364 bp Feature: domain Description: HEAT_2 Location: 4276223-4276364 bp Feature: domain Description: HEAT_2 Location: 4276373-4276607 bp Feature: domain Description: HEAT_2 Location: 4276373-4276607 bp Feature: domain Description: HEAT Location: 4277369-4277444 bp Feature: domain Description: HEAT Location: 4277369-4277444 bp Feature: domain Description: HEAT_2 Location: 4277750-4277993 bp Feature: domain Description: HEAT_2 Location: 4277750-4277993 bp Feature: domain Description: HEAT_2 Location: 4278293-4278506 bp Feature: domain Description: HEAT_2 Location: 4278293-4278506 bp Feature: domain Description: HEAT_2 Location: 4278521-4278695 bp Feature: domain Description: HEAT_2 Location: 4278521 -4278695 bp Feature: domain Description: HEAT_2 Location: 4279478-4279643 bp Feature: domain Description: HEAT_2 Location: 4279478-4279643 bp Feature: domain Description: HEAT_2 Location: 4279790-4279970 bp Feature: domain Description: HEAT_2 Location: 4279790-4279970 bp Feature: gene Location: 4326215-4327303 bp Ori: AGA27713.1 Feature: domain Description: N_methyl Location: 4326263-4326335 bp Feature: domain Description: N_methyl Location: 4326263-4326335 bp Feature: domain Description: SBP_bac_10 Location: 4326347-4327154 bp Feature: domain Description: SBP_bac_1 0 Location: 4326347-43271 54 bp Feature: gene Location: 4327376-4328470 bp Ori: AGA27714.1 Feature: domain Description: PepSY_TM Location: 4327406-4328429 bp Feature: domain Description: PepSY_TM Location: 4327406-4328429 bp Feature: gene Location: 4330046-4331299 bp Ori: AGA27715.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4330250-4330907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4330250-4330907 bp Feature: domain Description: GIIM Note: maturase Location: 4330988-4331213 bp Feature: domain Description: GIIM Note: maturase Location: 4330988-4331 21 3 bp Feature: gene Location: 4332717-4332974 bp Feature: gene Location: 4333314-4335968 bp Ori: AGA27717.1 Feature: domain Description: Hepar_II_III Location: 4334631-4334940 bp Feature: domain Description: Hepar_II_III Location: 4334631 -4334940 bp Feature: gene Location: 5443008-5444885 bp Ori: AGA28585.1 Feature: domain Description: AAA_16 Location: 5443080-5443485 bp Feature: domain Description: AAA_1 6 Location: 5443080-5443485 bp Feature: domain Description: HTH_ARSR Location: 5443902-5444115 bp Feature: domain Description: HTH_ARSR Location: 5443902-54441 1 5 bp Feature: domain Description: TPR Location: 5444229-5444385 bp Feature: domain Description: TPR Location: 5444229-5444385 bp Feature: gene Location: 5444847-5446199 bp Ori: AGA28586.1 Feature: domain Description: Beta-lactamase Location: 5445006-5446086 bp Feature: domain Description: Beta-lactamase Location: 5445006-5446086 bp Feature: gene Location: 5446241-5448178 bp Ori: AGA28587.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5447336-5447951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5447336-5447951 bp Feature: gene Location: 5448304-5449998 bp Ori: AGA28588.1 Feature: domain Description: DprA_WH Location: 5449465-5449618 bp Feature: domain Description: DprA_WH Location: 5449465-544961 8 bp Feature: gene Location: 5449995-5452010 bp Feature: gene Location: 5620983-5622035 bp Ori: AGA28716.1 Feature: domain Description: N_methyl Location: 5620992-5621070 bp Feature: domain Description: N_methyl Location: 5620992-5621 070 bp Feature: domain Description: SBP_bac_10 Location: 5621082-5621973 bp Feature: domain Description: SBP_bac_1 0 Location: 5621 082-5621 973 bp Feature: gene Location: 5622081-5622500 bp Feature: gene Location: 5623249-5625057 bp Ori: AGA28718.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5623690-5624107 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5623690-56241 07 bp Feature: gene Location: 5625054-5625962 bp Feature: gene Location: 5627420-5627896 bp Feature: gene Location: 7266571-7266912 bp Feature: gene Location: 7267531-7268154 bp Ori: AGA29926.1 Feature: domain Description: PEP_exosort Location: 7268071-7268140 bp Feature: domain Description: PEP_exosort Location: 7268071 -72681 40 bp Feature: gene Location: 7268607-7269860 bp Ori: AGA29927.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7268811-7269468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726881 1 -7269468 bp Feature: domain Description: GIIM Note: maturase Location: 7269549-7269774 bp Feature: domain Description: GIIM Note: maturase Location: 7269549-7269774 bp Feature: gene Location: 7270534-7271445 bp Ori: AGA29928.1 Feature: domain Description: AraC_N Location: 7270621-7271068 bp Feature: domain Description: AraC_N Location: 7270621 -7271 068 bp Feature: domain Description: AraC Location: 7271101-7271401 bp Feature: domain Description: AraC Location: 7271 1 01 -7271 401 bp Feature: gene Location: 7271761-7272822 bp Ori: AGA29929.1 Feature: domain Description: CAD1 Location: 7271779-7272799 bp Feature: domain Description: CAD1 Location: 7271 779-7272799 bp Feature: gene Location: 7925995-7926582 bp Ori: AGA30394.1 Feature: domain Description: DUF4112 Location: 7926139-7926433 bp Feature: domain Description: DUF41 1 2 Location: 79261 39-7926433 bp Feature: gene Location: 7926878-7927891 bp Ori: AGA30395.1 Feature: domain Description: LTXXQ Location: 7927034-7927265 bp Feature: domain Description: LTXXQ Location: 7927034-7927265 bp Feature: domain Description: LTXXQ Location: 7927295-7927382 bp Feature: domain Description: LTXXQ Location: 7927295-7927382 bp Feature: domain Description: LTXXQ Location: 7927688-7927835 bp Feature: domain Description: LTXXQ Location: 7927688-7927835 bp Feature: gene Location: 7928883-7930136 bp Ori: AGA30396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7929087-7929744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7929087-7929744 bp Feature: domain Description: GIIM Note: maturase Location: 7929825-7930050 bp Feature: domain Description: GIIM Note: maturase Location: 7929825-7930050 bp Feature: gene Location: 7931554-7931811 bp Feature: gene Location: 7932219-7932953 bp Ori: AGA30398.1 Feature: domain Description: Ferritin_2 Location: 7932429-7932723 bp Feature: domain Description: Ferritin_2 Location: 7932429-7932723 bp Feature: domain Description: Ferritin_2 Location: 7932867-7932939 bp Feature: domain Description: Ferritin_2 Location: 7932867-7932939 bp Feature: gene Location: 8441993-8444119 bp Ori: AGA30770.1 Feature: domain Description: PSCyt2 Location: 8442143-8442779 bp Feature: domain Description: PSCyt2 Location: 84421 43-8442779 bp Feature: domain Description: PSD1 Location: 8443304-8444045 bp Feature: domain Description: PSD1 Location: 8443304-8444045 bp Feature: gene Location: 8444126-8445526 bp Ori: AGA30771.1 Feature: domain Description: DUF1501 Location: 8444285-8445488 bp Feature: domain Description: DUF1 501 Location: 8444285-8445488 bp Feature: gene Location: 8446274-8447527 bp Ori: AGA30772.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8446478-8447135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8446478-84471 35 bp Feature: domain Description: GIIM Note: maturase Location: 8447216-8447441 bp Feature: domain Description: GIIM Note: maturase Location: 844721 6-8447441 bp Feature: gene Location: 8448945-8449202 bp Feature: gene Location: 8450124-8451473 bp Ori: AGA30774.1 Feature: domain Description: LytS Location: 8450259-8450664 bp Feature: domain Description: LytS Location: 8450259-8450664 bp Feature: domain Description: LytS Location: 8450754-8451423 bp Feature: domain Description: LytS Location: 8450754-8451 423 bp Feature: gene Location: 8611509-8611760 bp Feature: gene Location: 8612083-8614269 bp Ori: AGA30891.1 Feature: domain Description: PAS_like Location: 8612170-8613673 bp Feature: domain Description: PAS_like Location: 861 21 70-861 3673 bp Feature: gene Location: 8615089-8616342 bp Ori: AGA30892.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8615293-8615950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 861 5293-861 5950 bp Feature: domain Description: GIIM Note: maturase Location: 8616031-8616256 bp Feature: domain Description: GIIM Note: maturase Location: 861 6031 -861 6256 bp Feature: gene Location: 8617760-8618017 bp Feature: gene Location: 8618462-8618911 bp Ori: AGA30894.1 Feature: domain Description: OsmC Location: 8618522-8618900 bp Feature: domain Description: OsmC Location: 861 8522-861 8900 bp Feature: gene Location: 8865945-8866892 bp Ori: AGA31069.1 Feature: domain Description: ChoK-like Location: 8866062-8866656 bp Feature: domain Description: ChoK-like Location: 8866062-8866656 bp Feature: domain Description: ETNK_euk Location: 8866740-8866854 bp Feature: domain Description: ETNK_euk Location: 8866740-8866854 bp Feature: gene Location: 8867079-8867888 bp Ori: AGA31070.1 Feature: domain Description: PLN02336 Location: 8867097-8867880 bp Feature: domain Description: PLN02336 Location: 8867097-8867880 bp Feature: gene Location: 8868242-8869591 bp Ori: AGA31071.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8868722-8869364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8868722-8869364 bp Feature: gene Location: 8869669-8870925 bp Feature: gene Location: 8870974-8872920 bp Ori: AGA31073.1 Feature: domain Description: DAP2 Location: 8871334-8872876 bp Feature: domain Description: DAP2 Location: 8871 334-8872876 bp Feature: gene Location: 9409487-9410089 bp Ori: AGA31457.1 Feature: domain Description: fliG Location: 9409586-9409760 bp Feature: domain Description: fliG Location: 9409586-9409760 bp Feature: domain Description: fliG Location: 9409781-9410078 bp Feature: domain Description: fliG Location: 9409781 -941 0078 bp Feature: gene Location: 9410086-9411558 bp Ori: AGA31458.1 Feature: domain Description: YscJ_FliF Location: 9410203-9410767 bp Feature: domain Description: YscJ_FliF Location: 941 0203-941 0767 bp Feature: domain Description: fliF Location: 9411457-9411538 bp Feature: domain Description: fliF Location: 941 1 457-941 1 538 bp Feature: gene Location: 9412050-9413465 bp Ori: AGA31459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9412413-9413028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 241 3-941 3028 bp Feature: domain Description: GIIM Note: maturase Location: 9413076-9413280 bp Feature: domain Description: GIIM Note: maturase Location: 941 3076-941 3280 bp Feature: gene Location: 9413985-9414596 bp Feature: gene Location: 9415126-9417024 bp Ori: AGA31461.1 Feature: domain Description: ArnT Location: 9415243-9416557 bp Feature: domain Description: ArnT Location: 941 5243-941 6557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_MerR-trunc (cd04762), RVT-CRISPR, phage_DnaB (TIGR03600), MGAT2 (pfam05060), PT-HINT (pfam07591)
RVT-Retrons, SWIM (pfam04434), WGR_MMR_like (cd07996), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), N_methyl (pfam07963), SBP_bac_10 (pfam07596), PepSY_TM (pfam03929), RVT-GII
GIIM (pfam08388), Hepar_II_III (pfam07940), AAA_16 (pfam13191), HTH_ARSR (smart00418), TPR (smart00028), Beta-lactamase (pfam00144), DprA_WH (pfam17782), RVT-UG5, PEP_exosort (TIGR02595), AraC_N (pfam06719)
AraC (COG2207), CAD1 (cd05283), DUF4112 (pfam13430), LTXXQ (pfam07813), Ferritin_2 (pfam13668), PSCyt2 (pfam07583), PSD1 (pfam07587), DUF1501 (pfam07394), LytS (COG3275), PAS_like (cd16025)
OsmC (pfam02566), ChoK-like (cd05151), ETNK_euk (cd05157), PLN02336 (phosphoethanolamine N-methyltransferase), DAP2 (COG1506), fliG (TIGR00207), YscJ_FliF (pfam01514), fliF (TIGR00206), ArnT (COG1807)