myRT

myRT report for GCA_000242895.3_ASM24289v3

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Seq: CP005586.1 Bacillus sp. 1NLA3E, complete genome (4815602 bp)
Overview 1 RT 1: 567615-582118 bp 2 RT 2: 1194390-1204654 bp 3 RT 3: 1546247-1555808 bp 4 RT 4: 2059626-2064804 bp 5 RT 5: 2091272-2096629 bp 6 RT 6: 2989909-2997408 bp 7 RT 7: 3806645-3813095 bp 8 RT 8: 4372189-4380002 bp Neighborhood of RT #1 [567615, 582118] Methyltransf_32 DUF772 DDE_Tnp_1_3 DDE_Tnp_1_6 RVT-GII HNHc HTH_MARR RVT-GII HTH_MARR retinol-DH_like_SDR_c_like RVT-GII HNHc Neighborhood of RT #2 [1194390, 1204654] FtsX FtsX KOG1238 KOG1238 RVT-GII GIIM DUF3231 DUF3231 Neighborhood of RT #3 [1546247, 1555810] PRK11183 RVT-GII mycofact_OYE_2 LolE LolE Neighborhood of RT #4 [2059626, 2064804] NERD RVT-GII GIIM COG3972 COG3972 COG3972 Neighborhood of RT #5 [2091272, 2096629] Methyltransf_25 RVT-GII GIIM Neighborhood of RT #6 [2989909, 2997408] cxxc_20_cxxc bPH_4 RVT-GII GIIM RVT-GII HNHc Neighborhood of RT #7 [3806645, 3813139] OYE_like_2_FMN DltE RVT-GII GIIM YdfG OYE_like_4_FMN Neighborhood of RT #8 [4372189, 4380004] group_II_RT_mat HNHc RVT-GII GIIM RVT-GII RAYT ManA ManA Feature: gene Location: 567615-568223 bp Ori: AGK52300.1 Feature: domain Description: Methyltransf_32 Location: 567732-567912 bp Feature: domain Description: Methyltransf_32 Location: 567732-56791 2 bp Feature: gene Location: 568620-570080 bp Ori: AGK52301.1 Feature: domain Description: DUF772 Location: 568776-568980 bp Feature: domain Description: DUF772 Location: 568776-568980 bp Feature: domain Description: DDE_Tnp_1_3 Location: 569370-569631 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 569370-569631 bp Feature: domain Description: DDE_Tnp_1_6 Location: 569685-570054 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 569685-570054 bp Feature: gene Location: 570538-572334 bp Ori: AGK52302.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570829-571528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570829-571 528 bp Feature: domain Description: HNHc Note: nucleases Location: 572083-572221 bp Feature: domain Description: HNHc Note: nucleases Location: 572083-572221 bp Feature: gene Location: 573249-573710 bp Ori: AGK52303.1 Feature: domain Description: HTH_MARR Location: 573375-573651 bp Feature: domain Description: HTH_MARR Location: 573375-573651 bp Feature: gene Location: 574129-575127 bp Ori: AGK52304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574420-575023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574420-575023 bp Feature: gene Location: 576042-576503 bp Ori: AGK52305.1 Feature: domain Description: HTH_MARR Location: 576168-576444 bp Feature: domain Description: HTH_MARR Location: 5761 68-576444 bp Feature: gene Location: 576624-577493 bp Ori: AGK52306.1 Feature: domain Description: retinol-DH_like_SDR_c_like Location: 576642-577455 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 576642-577455 bp Feature: gene Location: 577557-577757 bp Feature: gene Location: 578003-579799 bp Ori: AGK52308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578294-578993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578294-578993 bp Feature: domain Description: HNHc Note: nucleases Location: 579548-579686 bp Feature: domain Description: HNHc Note: nucleases Location: 579548-579686 bp Feature: gene Location: 580674-581420 bp Feature: gene Location: 581894-582118 bp Feature: gene Location: 1194390-1196366 bp Ori: AGK52847.1 Feature: domain Description: FtsX Location: 1194657-1194906 bp Feature: domain Description: FtsX Location: 1 1 94657-1 1 94906 bp Feature: domain Description: FtsX Location: 1196091-1196328 bp Feature: domain Description: FtsX Location: 1 1 96091 -1 1 96328 bp Feature: gene Location: 1197310-1198992 bp Ori: AGK52848.1 Feature: domain Description: KOG1238 Location: 1197319-1198312 bp Feature: domain Description: KOG1 238 Location: 1 1 9731 9-1 1 9831 2 bp Feature: domain Description: KOG1238 Location: 1198486-1198984 bp Feature: domain Description: KOG1 238 Location: 1 1 98486-1 1 98984 bp Feature: gene Location: 1199960-1201288 bp Ori: AGK52849.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1200215-1200908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20021 5-1 200908 bp Feature: domain Description: GIIM Note: maturase Location: 1200998-1201202 bp Feature: domain Description: GIIM Note: maturase Location: 1 200998-1 201 202 bp Feature: gene Location: 1201636-1202661 bp Ori: AGK52850.1 Feature: domain Description: DUF3231 Location: 1201645-1202116 bp Feature: domain Description: DUF3231 Location: 1 201 645-1 2021 1 6 bp Feature: domain Description: DUF3231 Location: 1202155-1202635 bp Feature: domain Description: DUF3231 Location: 1 2021 55-1 202635 bp Feature: gene Location: 1204451-1204654 bp Feature: gene Location: 1546247-1546471 bp Feature: gene Location: 1548105-1549787 bp Ori: AGK53184.1 Feature: domain Description: PRK11183 Location: 1548114-1549785 bp Feature: domain Description: PRK1 1 1 83 Location: 1 5481 1 4-1 549785 bp Feature: gene Location: 1550206-1550568 bp Ori: AGK53185.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1550221-1550434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 550221 -1 550434 bp Feature: gene Location: 1550982-1552970 bp Ori: AGK53186.1 Feature: domain Description: mycofact_OYE_2 Location: 1551000-1552908 bp Feature: domain Description: mycofact_OYE_2 Location: 1 551 000-1 552908 bp Feature: gene Location: 1553324-1555810 bp Ori: AGK53187.1 Feature: domain Description: LolE Location: 1553336-1554467 bp Feature: domain Description: LolE Location: 1 553336-1 554467 bp Feature: domain Description: LolE Location: 1554737-1555808 bp Feature: domain Description: LolE Location: 1 554737-1 555808 bp Feature: gene Location: 2059626-2060009 bp Feature: gene Location: 2060216-2060893 bp Ori: AGK53641.1 Feature: domain Description: NERD Location: 2060258-2060537 bp Feature: domain Description: NERD Location: 2060258-2060537 bp Feature: gene Location: 2060962-2062290 bp Ori: AGK53642.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061217-2061910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 21 7-2061 91 0 bp Feature: domain Description: GIIM Note: maturase Location: 2062000-2062204 bp Feature: domain Description: GIIM Note: maturase Location: 2062000-2062204 bp Feature: gene Location: 2062775-2064064 bp Ori: AGK53643.1 Feature: domain Description: COG3972 Location: 2062847-2063057 bp Feature: domain Description: COG3972 Location: 2062847-2063057 bp Feature: domain Description: COG3972 Location: 2063189-2063366 bp Feature: domain Description: COG3972 Location: 20631 89-2063366 bp Feature: domain Description: COG3972 Location: 2063588-2063990 bp Feature: domain Description: COG3972 Location: 2063588-2063990 bp Feature: gene Location: 2064580-2064804 bp Feature: gene Location: 2091272-2092012 bp Ori: AGK53669.1 Feature: domain Description: Methyltransf_25 Location: 2091413-2091668 bp Feature: domain Description: Methyltransf_25 Location: 2091 41 3-2091 668 bp Feature: gene Location: 2092252-2092500 bp Feature: gene Location: 2093706-2094788 bp Ori: AGK53671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2093715-2094408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209371 5-2094408 bp Feature: domain Description: GIIM Note: maturase Location: 2094492-2094696 bp Feature: domain Description: GIIM Note: maturase Location: 2094492-2094696 bp Feature: gene Location: 2095656-2096129 bp Feature: gene Location: 2096126-2096629 bp Feature: gene Location: 2989909-2990208 bp Ori: AGK54473.1 Feature: domain Description: cxxc_20_cxxc Location: 2989918-2990191 bp Feature: domain Description: cxxc_20_cxxc Location: 298991 8-29901 91 bp Feature: gene Location: 2990371-2990811 bp Ori: AGK54474.1 Feature: domain Description: bPH_4 Location: 2990560-2990776 bp Feature: domain Description: bPH_4 Location: 2990560-2990776 bp Feature: gene Location: 2991370-2992698 bp Ori: AGK54475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2991625-2992318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2991 625-299231 8 bp Feature: domain Description: GIIM Note: maturase Location: 2992408-2992612 bp Feature: domain Description: GIIM Note: maturase Location: 2992408-299261 2 bp Feature: gene Location: 2993343-2995139 bp Ori: AGK54476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993634-2994333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993634-2994333 bp Feature: domain Description: HNHc Note: nucleases Location: 2994888-2995026 bp Feature: domain Description: HNHc Note: nucleases Location: 2994888-2995026 bp Feature: gene Location: 2996019-2996630 bp Feature: gene Location: 2997190-2997408 bp Feature: gene Location: 3806645-3807883 bp Ori: AGK55262.1 Feature: domain Description: OYE_like_2_FMN Location: 3806669-3807671 bp Feature: domain Description: OYE_like_2_FMN Location: 3806669-3807671 bp Feature: gene Location: 3808123-3808668 bp Ori: AGK55263.1 Feature: domain Description: DltE Location: 3808141-3808618 bp Feature: domain Description: DltE Location: 38081 41 -380861 8 bp Feature: gene Location: 3809215-3810543 bp Ori: AGK55264.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3809470-3810163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3809470-381 01 63 bp Feature: domain Description: GIIM Note: maturase Location: 3810253-3810457 bp Feature: domain Description: GIIM Note: maturase Location: 381 0253-381 0457 bp Feature: gene Location: 3811216-3811956 bp Ori: AGK55265.1 Feature: domain Description: YdfG Location: 3811219-3811951 bp Feature: domain Description: YdfG Location: 381 1 21 9-381 1 951 bp Feature: gene Location: 3812015-3813139 bp Ori: AGK55266.1 Feature: domain Description: OYE_like_4_FMN Location: 3812039-3813095 bp Feature: domain Description: OYE_like_4_FMN Location: 381 2039-381 3095 bp Feature: gene Location: 4372189-4372803 bp Feature: gene Location: 4372967-4373896 bp Ori: AGK55782.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4372979-4373333 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4372979-4373333 bp Feature: domain Description: HNHc Note: nucleases Location: 4373651-4373786 bp Feature: domain Description: HNHc Note: nucleases Location: 4373651 -4373786 bp Feature: gene Location: 4374012-4375256 bp Ori: AGK55783.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4374216-4374870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437421 6-4374870 bp Feature: domain Description: GIIM Note: maturase Location: 4374951-4375170 bp Feature: domain Description: GIIM Note: maturase Location: 4374951 -43751 70 bp Feature: gene Location: 4375764-4376651 bp Ori: AGK55784.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4376061-4376613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4376061 -437661 3 bp Feature: gene Location: 4378197-4378742 bp Ori: AGK55785.1 Feature: domain Description: RAYT Location: 4378200-4378611 bp Feature: domain Description: RAYT Location: 4378200-437861 1 bp Feature: gene Location: 4379015-4380004 bp Ori: AGK55786.1 Feature: domain Description: ManA Location: 4379069-4379456 bp Feature: domain Description: ManA Location: 4379069-4379456 bp Feature: domain Description: ManA Location: 4379489-4380002 bp Feature: domain Description: ManA Location: 4379489-4380002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_32 (pfam13679), DUF772 (pfam05598), DDE_Tnp_1_3 (pfam13612), DDE_Tnp_1_6 (pfam13751), RVT-GII, HNHc (smart00507), HTH_MARR (smart00347), retinol-DH_like_SDR_c_like (cd05327), FtsX (pfam02687), KOG1238 (KOG1238, Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) )
GIIM (pfam08388), DUF3231 (pfam11553), PRK11183 (D-lactate dehydrogenase; Provisional), mycofact_OYE_2 (TIGR03997), LolE (COG4591), NERD (pfam08378), COG3972 (Superfamily I DNA and RNA helicases ), Methyltransf_25 (pfam13649), cxxc_20_cxxc (TIGR04104), bPH_4 (pfam06713)
OYE_like_2_FMN (cd04733), DltE (COG3967), YdfG (COG4221), OYE_like_4_FMN (cd04735), group_II_RT_mat (TIGR04416), RAYT (COG1943), ManA (COG1482)