myRT

myRT report for GCA_000247605.1_ASM24760v1

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Seq: CP002987.1 Acetobacterium woodii DSM 1030, complete genome (4044777 bp)
Overview 1 RT 1: 160467-167781 bp 2 RT 2: 1016596-1023253 bp 3 RT 3: 1329059-1341830 bp 4 RT 4: 1758090-1763446 bp Neighborhood of RT #1 [160467, 167900] RVT-Retrons DUF2971 ImmA Neighborhood of RT #2 [1016596, 1023321] HsdM RMtype1_S_EcoAO83I-TRD1-CR1_like RMtype1_S_EcoAO83I-TRD1-CR1_like RVT-UG15 PRK01286 PRK01286 AlbA_2 Neighborhood of RT #3 [1329059, 1341892] HDGYP YtxK COG4646 RVT_N RVT-GII GIIM PRK03103 Neighborhood of RT #4 [1758090, 1763446] EAL PDC1_HK_sensor PRK03103 RVT-GII Intron_maturas2 PRK03103 Feature: gene Location: 160467-160802 bp Feature: gene Location: 161369-162412 bp Feature: gene Location: 162817-164532 bp Ori: AFA46955.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162943-163543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 62943-1 63543 bp Feature: gene Location: 164558-165715 bp Ori: AFA46956.1 Feature: domain Description: DUF2971 Location: 164978-165320 bp Feature: domain Description: DUF2971 Location: 1 64978-1 65320 bp Feature: gene Location: 166737-167900 bp Ori: AFA46957.1 Feature: domain Description: ImmA Location: 167193-167781 bp Feature: domain Description: ImmA Location: 1 671 93-1 67781 bp Feature: gene Location: 1016596-1018116 bp Ori: AFA47671.1 Gene: hsdM2 Feature: domain Description: HsdM Location: 1016626-1018102 bp Feature: domain Description: HsdM Location: 1 01 6626-1 01 81 02 bp Feature: gene Location: 1018106-1019374 bp Ori: AFA47672.1 Gene: hsdS2 Feature: domain Description: RMtype1_S_EcoAO83I-TRD1-CR1_like Location: 1018481-1018733 bp Feature: domain Description: RMtype1 _S_EcoAO83I-TRD1 -CR1 _like Location: 1 01 8481 -1 01 8733 bp Feature: domain Description: RMtype1_S_EcoAO83I-TRD1-CR1_like Location: 1018847-1019315 bp Feature: domain Description: RMtype1 _S_EcoAO83I-TRD1 -CR1 _like Location: 1 01 8847-1 01 931 5 bp Feature: gene Location: 1019361-1020878 bp Ori: AFA47673.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1019784-1020183 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 01 9784-1 0201 83 bp Feature: gene Location: 1020991-1022937 bp Ori: AFA47674.1 Gene: dgt Feature: domain Description: PRK01286 Location: 1021558-1022737 bp Feature: domain Description: PRK01 286 Location: 1 021 558-1 022737 bp Feature: domain Description: PRK01286 Location: 1022830-1022929 bp Feature: domain Description: PRK01 286 Location: 1 022830-1 022929 bp Feature: gene Location: 1022965-1023321 bp Ori: AFA47675.1 Feature: domain Description: AlbA_2 Location: 1022968-1023253 bp Feature: domain Description: AlbA_2 Location: 1 022968-1 023253 bp Feature: gene Location: 1329059-1329826 bp Ori: AFA47943.1 Feature: domain Description: HDGYP Location: 1329266-1329749 bp Feature: domain Description: HDGYP Location: 1 329266-1 329749 bp Feature: gene Location: 1329905-1336648 bp Ori: AFA47944.1 Feature: domain Description: YtxK Location: 1332764-1333454 bp Feature: domain Description: YtxK Location: 1 332764-1 333454 bp Feature: domain Description: COG4646 Location: 1333526-1336154 bp Feature: domain Description: COG4646 Location: 1 333526-1 3361 54 bp Feature: gene Location: 1337230-1338900 bp Ori: AFA47945.1 Feature: domain Description: RVT_N Location: 1337275-1337515 bp Feature: domain Description: RVT_N Location: 1 337275-1 33751 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1337563-1338211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 337563-1 33821 1 bp Feature: domain Description: GIIM Note: maturase Location: 1338265-1338496 bp Feature: domain Description: GIIM Note: maturase Location: 1 338265-1 338496 bp Feature: gene Location: 1339034-1339852 bp Feature: gene Location: 1340639-1341892 bp Ori: AFA47947.1 Gene: dinB1 Feature: domain Description: PRK03103 Location: 1340642-1341830 bp Feature: domain Description: PRK031 03 Location: 1 340642-1 341 830 bp Feature: gene Location: 1758090-1759358 bp Ori: AFA48285.1 Feature: domain Description: EAL Location: 1758129-1758846 bp Feature: domain Description: EAL Location: 1 7581 29-1 758846 bp Feature: domain Description: PDC1_HK_sensor Location: 1759047-1759305 bp Feature: domain Description: PDC1 _HK_sensor Location: 1 759047-1 759305 bp Feature: gene Location: 1759739-1760074 bp Ori: AFA48286.1 Gene: dinB2 Feature: domain Description: PRK03103 Location: 1759742-1760066 bp Feature: domain Description: PRK031 03 Location: 1 759742-1 760066 bp Feature: gene Location: 1760616-1762055 bp Ori: AFA48287.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1760895-1761534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 760895-1 761 534 bp Feature: domain Description: Intron_maturas2 Location: 1761612-1761915 bp Feature: domain Description: Intron_maturas2 Location: 1 761 61 2-1 761 91 5 bp Feature: gene Location: 1762259-1763188 bp Ori: AFA48288.1 Gene: dinB3 Feature: domain Description: PRK03103 Location: 1762262-1763123 bp Feature: domain Description: PRK031 03 Location: 1 762262-1 7631 23 bp Feature: gene Location: 1763204-1763446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF2971 (pfam11185), ImmA (COG2856), HsdM (COG0286), RMtype1_S_EcoAO83I-TRD1-CR1_like (cd17267), RVT-UG15, PRK01286 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), AlbA_2 (pfam04326), HDGYP (COG2206), YtxK (COG0827)
COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK03103 (DNA polymerase IV; Reviewed), EAL (smart00052), PDC1_HK_sensor (cd18773), Intron_maturas2 (pfam01348)