myRT

myRT report for GCA_000257545.3_ASM25754v3

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Seq: CP005961.1 Pseudomonas mandelii JR-1 plasmid, complete sequence (410512 bp)
Overview 1 RT 1: 23313-28370 bp 2 RT 2: 60510-65526 bp 3 RT 3: 77519-83914 bp 4 RT 4: 241243-244488 bp Neighborhood of RT #1 [23313, 28370] RVT-GII Recombinase Zn_ribbon_recom HTH_17 HTH_17 RVT-GII GIIM Neighborhood of RT #2 [60510, 65526] IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Resolvase Recombinase RVT-GII RVT-GII Neighborhood of RT #3 [77519, 83914] RVT_N RVT-GII DUF2790 GIIM RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 InsE RVT-GII Neighborhood of RT #4 [241243, 244488] IS5 RVT-GII GIIM IS5 Feature: gene Location: 23313-23462 bp Feature: gene Location: 23557-23697 bp Feature: gene Location: 24043-24519 bp Ori: AHZ73284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24235-24487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24235-24487 bp Feature: gene Location: 24489-26171 bp Ori: AHZ73285.1 Feature: domain Description: Recombinase Location: 24546-24897 bp Feature: domain Description: Recombinase Location: 24546-24897 bp Feature: domain Description: Zn_ribbon_recom Location: 24954-25116 bp Feature: domain Description: Zn_ribbon_recom Location: 24954-251 1 6 bp Feature: domain Description: HTH_17 Location: 25833-25956 bp Feature: domain Description: HTH_1 7 Location: 25833-25956 bp Feature: domain Description: HTH_17 Location: 26016-26130 bp Feature: domain Description: HTH_1 7 Location: 2601 6-261 30 bp Feature: gene Location: 26218-27030 bp Ori: AHZ73286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26221-26581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26221 -26581 bp Feature: domain Description: GIIM Note: maturase Location: 26635-26851 bp Feature: domain Description: GIIM Note: maturase Location: 26635-26851 bp Feature: gene Location: 27190-27915 bp Feature: gene Location: 27927-28370 bp Feature: gene Location: 60510-61259 bp Ori: AHZ73326.1 Feature: domain Description: IstB_IS21_ATP Location: 60582-60666 bp Feature: domain Description: IstB_IS21 _ATP Location: 60582-60666 bp Feature: domain Description: IstB_IS21 Location: 60669-61200 bp Feature: domain Description: IstB_IS21 Location: 60669-61 200 bp Feature: gene Location: 61237-62820 bp Ori: AHZ73327.1 Feature: domain Description: COG4584 Location: 61360-62158 bp Feature: domain Description: COG4584 Location: 61 360-621 58 bp Feature: domain Description: COG4584 Location: 62299-62674 bp Feature: domain Description: COG4584 Location: 62299-62674 bp Feature: gene Location: 62983-64560 bp Ori: AHZ73328.1 Feature: domain Description: Resolvase Location: 63004-63442 bp Feature: domain Description: Resolvase Location: 63004-63442 bp Feature: domain Description: Recombinase Location: 63538-63865 bp Feature: domain Description: Recombinase Location: 63538-63865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63955-64264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63955-64264 bp Feature: gene Location: 64855-65058 bp Ori: AHZ73329.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64867-65026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64867-65026 bp Feature: gene Location: 65114-65323 bp Feature: gene Location: 65362-65526 bp Feature: gene Location: 77519-77644 bp Feature: gene Location: 77943-78065 bp Feature: gene Location: 78119-78517 bp Ori: AHZ73350.1 Feature: domain Description: RVT_N Location: 78125-78365 bp Feature: domain Description: RVT_N Location: 781 25-78365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78413-78512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7841 3-7851 2 bp Feature: gene Location: 78637-78780 bp Feature: gene Location: 79482-79640 bp Feature: gene Location: 79775-80107 bp Ori: AHZ73353.1 Feature: domain Description: DUF2790 Location: 79865-80093 bp Feature: domain Description: DUF2790 Location: 79865-80093 bp Feature: gene Location: 80274-80708 bp Ori: AHZ73354.1 Feature: domain Description: GIIM Note: maturase Location: 80367-80550 bp Feature: domain Description: GIIM Note: maturase Location: 80367-80550 bp Feature: gene Location: 80777-80944 bp Ori: AHZ73355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80783-80939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80783-80939 bp Feature: gene Location: 81028-82554 bp Ori: AHZ73356.1 Feature: domain Description: LZ_Tnp_IS66 Location: 81154-81373 bp Feature: domain Description: LZ_Tnp_IS66 Location: 81 1 54-81 373 bp Feature: domain Description: zf-IS66 Location: 81394-81520 bp Feature: domain Description: zf-IS66 Location: 81 394-81 520 bp Feature: domain Description: DDE_Tnp_IS66 Location: 81562-82405 bp Feature: domain Description: DDE_Tnp_IS66 Location: 81 562-82405 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 82426-82537 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 82426-82537 bp Feature: gene Location: 82617-82952 bp Ori: AHZ73357.1 Feature: domain Description: TnpB_IS66 Location: 82635-82923 bp Feature: domain Description: TnpB_IS66 Location: 82635-82923 bp Feature: gene Location: 82949-83266 bp Ori: AHZ73358.1 Feature: domain Description: InsE Location: 82955-83117 bp Feature: domain Description: InsE Location: 82955-831 1 7 bp Feature: gene Location: 83327-83446 bp Ori: AHZ73359.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83339-83408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83339-83408 bp Feature: gene Location: 83502-83711 bp Feature: gene Location: 83750-83914 bp Feature: gene Location: 241243-241782 bp Ori: AHZ73544.1 Gene: tnpA4 Feature: domain Description: IS5 Location: 241432-241759 bp Feature: domain Description: IS5 Location: 241 432-241 759 bp Feature: gene Location: 241757-241924 bp Feature: gene Location: 242275-243543 bp Ori: AHZ73546.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242488-243145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242488-2431 45 bp Feature: domain Description: GIIM Note: maturase Location: 243223-243445 bp Feature: domain Description: GIIM Note: maturase Location: 243223-243445 bp Feature: gene Location: 243615-244073 bp Ori: AHZ73547.1 Feature: domain Description: IS5 Location: 243618-244047 bp Feature: domain Description: IS5 Location: 24361 8-244047 bp Feature: gene Location: 244369-244488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), GIIM (pfam08388), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), Resolvase (smart00857), RVT_N (pfam13655)
DUF2790 (pfam10976), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), InsE (COG2963), IS5 (COG3039)