myRT

myRT report for GCA_000261045.2_ASM26104v2

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Seq: CP015613.1 Serratia plymuthica PRI-2C chromosome, complete genome (5474685 bp)
Overview 1 RT 1: 1189212-1192068 bp 2 RT 2: 1220930-1224772 bp 3 RT 3: 2016509-2023017 bp 4 RT 4: 4955592-4962627 bp Neighborhood of RT #1 [1189212, 1192068] PRK15287 PRK15260 RVT-UG4 Neighborhood of RT #2 [1220930, 1224772] PRK15287 FimA RVT-UG4 Neighborhood of RT #3 [2016509, 2023017] FI RVT-Retrons COG5301 Neighborhood of RT #4 [4955592, 4962638] PRK12937 RVT-GII Intron_maturas2 HNHc PRK09010 uvrA Feature: gene Location: 1189212-1189688 bp Ori: ANS41593.1 Gene: yfcQ_3 Feature: domain Description: PRK15287 Location: 1189239-1189686 bp Feature: domain Description: PRK1 5287 Location: 1 1 89239-1 1 89686 bp Feature: gene Location: 1189703-1190230 bp Ori: ANS41594.1 Gene: yfcP_2 Feature: domain Description: PRK15260 Location: 1189748-1190225 bp Feature: domain Description: PRK1 5260 Location: 1 1 89748-1 1 90225 bp Feature: gene Location: 1190223-1191200 bp Ori: ANS41595.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1190574-1191009 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 90574-1 1 91 009 bp Feature: gene Location: 1191010-1191633 bp Feature: gene Location: 1191778-1192068 bp Feature: gene Location: 1220930-1221421 bp Ori: ANS41627.1 Gene: yfcQ_5 Feature: domain Description: PRK15287 Location: 1220978-1221419 bp Feature: domain Description: PRK1 5287 Location: 1 220978-1 221 41 9 bp Feature: gene Location: 1221418-1221951 bp Ori: ANS41628.1 Gene: yfcP_3 Feature: domain Description: FimA Location: 1221451-1221949 bp Feature: domain Description: FimA Location: 1 221 451 -1 221 949 bp Feature: gene Location: 1221944-1222909 bp Ori: ANS41629.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1222289-1222730 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 222289-1 222730 bp Feature: gene Location: 1222967-1223767 bp Feature: gene Location: 1224320-1224772 bp Feature: gene Location: 2016509-2017681 bp Ori: ANS42366.1 Gene: gpFI_2 Feature: domain Description: FI Location: 2016512-2017673 bp Feature: domain Description: FI Location: 201 651 2-201 7673 bp Feature: gene Location: 2018299-2019000 bp Feature: gene Location: 2018997-2020217 bp Ori: ANS42368.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2019180-2019759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 201 91 80-201 9759 bp Feature: gene Location: 2020609-2021466 bp Ori: ANS42369.1 Feature: domain Description: COG5301 Location: 2020612-2020951 bp Feature: domain Description: COG5301 Location: 202061 2-2020951 bp Feature: gene Location: 2022103-2023017 bp Feature: gene Location: 4955592-4956341 bp Ori: ANS45042.1 Gene: bdcA Feature: domain Description: PRK12937 Location: 4955616-4956333 bp Feature: domain Description: PRK1 2937 Location: 495561 6-4956333 bp Feature: gene Location: 4956380-4956541 bp Feature: gene Location: 4956495-4958225 bp Ori: ANS45044.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4956633-4957470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4956633-4957470 bp Feature: domain Description: Intron_maturas2 Location: 4957584-4957860 bp Feature: domain Description: Intron_maturas2 Location: 4957584-4957860 bp Feature: domain Description: HNHc Note: nucleases Location: 4958001-4958178 bp Feature: domain Description: HNHc Note: nucleases Location: 4958001 -49581 78 bp Feature: gene Location: 4958990-4959526 bp Ori: ANS45045.1 Gene: ssb Feature: domain Description: PRK09010 Location: 4958993-4959524 bp Feature: domain Description: PRK0901 0 Location: 4958993-4959524 bp Feature: gene Location: 4959804-4962638 bp Ori: ANS45046.1 Gene: uvrA Feature: domain Description: uvrA Location: 4959807-4962627 bp Feature: domain Description: uvrA Location: 4959807-4962627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), PRK15260 (fimbrial protein SteF; Provisional), RVT-UG4, FimA (pfam16970), FI (PHA02560), RVT-Retrons, COG5301 (Phage-related tail fibre protein ), PRK12937 (short chain dehydrogenase; Provisional), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), uvrA (PRK00349)