myRT

myRT report for GCA_000265365.1_ASM26536v1

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Seq: CP003274.1 Alistipes finegoldii DSM 17242, complete genome (3734239 bp)
Overview 1 RT 1: 604287-608533 bp 2 RT 2: 760365-772340 bp 3 RT 3: 1051941-1056580 bp 4 RT 4: 1074258-1077999 bp 5 RT 5: 2373581-2384000 bp 6 RT 6: 2423203-2426741 bp 7 RT 7: 3633898-3639054 bp Neighborhood of RT #1 [604287, 610077] SWIB-MDM2 RVT-DGRs Prophage_tail Prophage_tail Neighborhood of RT #2 [760365, 772340] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 RVT_N RVT-GII GIIM RVT-GII Intron_maturas2 HNHc DUF3876 Neighborhood of RT #3 [1051941, 1056580] FkpA PepSY_like RVT-DGRs Avd_like Neighborhood of RT #4 [1074258, 1078043] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Neighborhood of RT #5 [2373581, 2384080] GlpC GlpC cysKM RVT-GII Intron_maturas2 HNHc DEXDc PHA02517 Neighborhood of RT #6 [2423203, 2426764] DUF3876 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #7 [3633898, 3639134] DUF2023 RVT-GII Intron_maturas2 HNHc PHA02517 Feature: gene Location: 604287-605009 bp Ori: AFL76924.1 Feature: domain Description: SWIB-MDM2 Location: 604506-604629 bp Feature: domain Description: SWIB-MDM2 Location: 604506-604629 bp Feature: gene Location: 605053-605400 bp Feature: gene Location: 605682-606719 bp Ori: AFL76926.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 605889-606561 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 605889-606561 bp Feature: gene Location: 606685-607101 bp Feature: gene Location: 607111-610077 bp Ori: AFL76928.1 Feature: domain Description: Prophage_tail Location: 607465-607666 bp Feature: domain Description: Prophage_tail Location: 607465-607666 bp Feature: domain Description: Prophage_tail Location: 608287-608533 bp Feature: domain Description: Prophage_tail Location: 608287-608533 bp Feature: gene Location: 760365-760901 bp Feature: gene Location: 761045-761341 bp Ori: AFL77067.1 Feature: domain Description: DUF4134 Location: 761063-761336 bp Feature: domain Description: DUF41 34 Location: 761 063-761 336 bp Feature: gene Location: 761959-763776 bp Ori: AFL77068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762223-763045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762223-763045 bp Feature: domain Description: Intron_maturas2 Location: 763120-763447 bp Feature: domain Description: Intron_maturas2 Location: 7631 20-763447 bp Feature: domain Description: HNHc Note: nucleases Location: 763600-763750 bp Feature: domain Description: HNHc Note: nucleases Location: 763600-763750 bp Feature: gene Location: 763905-764162 bp Ori: AFL77069.1 Feature: domain Description: DUF4133 Location: 763911-764118 bp Feature: domain Description: DUF41 33 Location: 76391 1 -7641 1 8 bp Feature: gene Location: 765695-767356 bp Ori: AFL77070.1 Feature: domain Description: RVT_N Location: 765749-765992 bp Feature: domain Description: RVT_N Location: 765749-765992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766037-766685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766037-766685 bp Feature: domain Description: GIIM Note: maturase Location: 766739-766970 bp Feature: domain Description: GIIM Note: maturase Location: 766739-766970 bp Feature: gene Location: 769189-770994 bp Ori: AFL77071.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769453-770275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769453-770275 bp Feature: domain Description: Intron_maturas2 Location: 770347-770671 bp Feature: domain Description: Intron_maturas2 Location: 770347-770671 bp Feature: domain Description: HNHc Note: nucleases Location: 770824-770971 bp Feature: domain Description: HNHc Note: nucleases Location: 770824-770971 bp Feature: gene Location: 771545-771916 bp Ori: AFL77072.1 Feature: domain Description: DUF3876 Location: 771638-771887 bp Feature: domain Description: DUF3876 Location: 771 638-771 887 bp Feature: gene Location: 771906-772340 bp Feature: gene Location: 1051941-1052504 bp Ori: AFL77338.1 Feature: domain Description: FkpA Location: 1052073-1052364 bp Feature: domain Description: FkpA Location: 1 052073-1 052364 bp Feature: gene Location: 1052888-1053343 bp Ori: AFL77339.1 Feature: domain Description: PepSY_like Location: 1053083-1053329 bp Feature: domain Description: PepSY_like Location: 1 053083-1 053329 bp Feature: gene Location: 1053361-1054641 bp Ori: AFL77340.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1053556-1054363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 053556-1 054363 bp Feature: gene Location: 1055635-1056021 bp Ori: AFL77341.1 Feature: domain Description: Avd_like Location: 1055662-1055968 bp Feature: domain Description: Avd_like Location: 1 055662-1 055968 bp Feature: gene Location: 1055990-1056580 bp Feature: gene Location: 1074258-1074782 bp Feature: gene Location: 1074926-1075222 bp Ori: AFL77356.1 Feature: domain Description: DUF4134 Location: 1074944-1075217 bp Feature: domain Description: DUF41 34 Location: 1 074944-1 07521 7 bp Feature: gene Location: 1075840-1077657 bp Ori: AFL77357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076104-1076926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0761 04-1 076926 bp Feature: domain Description: Intron_maturas2 Location: 1077001-1077328 bp Feature: domain Description: Intron_maturas2 Location: 1 077001 -1 077328 bp Feature: domain Description: HNHc Note: nucleases Location: 1077481-1077631 bp Feature: domain Description: HNHc Note: nucleases Location: 1 077481 -1 077631 bp Feature: gene Location: 1077786-1078043 bp Ori: AFL77358.1 Feature: domain Description: DUF4133 Location: 1077792-1077999 bp Feature: domain Description: DUF41 33 Location: 1 077792-1 077999 bp Feature: gene Location: 2373581-2375329 bp Ori: AFL78399.1 Feature: domain Description: GlpC Location: 2374364-2374580 bp Feature: domain Description: GlpC Location: 2374364-2374580 bp Feature: domain Description: GlpC Location: 2374625-2375312 bp Feature: domain Description: GlpC Location: 2374625-237531 2 bp Feature: gene Location: 2375377-2376264 bp Ori: AFL78400.1 Feature: domain Description: cysKM Location: 2375383-2376247 bp Feature: domain Description: cysKM Location: 2375383-2376247 bp Feature: gene Location: 2377821-2379626 bp Ori: AFL78401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378085-2378907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378085-2378907 bp Feature: domain Description: Intron_maturas2 Location: 2378979-2379303 bp Feature: domain Description: Intron_maturas2 Location: 2378979-2379303 bp Feature: domain Description: HNHc Note: nucleases Location: 2379456-2379603 bp Feature: domain Description: HNHc Note: nucleases Location: 2379456-2379603 bp Feature: gene Location: 2380742-2382904 bp Ori: AFL78402.1 Feature: domain Description: DEXDc Location: 2381042-2381459 bp Feature: domain Description: DEXDc Location: 2381 042-2381 459 bp Feature: gene Location: 2383190-2384080 bp Ori: AFL78403.1 Feature: domain Description: PHA02517 Location: 2383274-2384000 bp Feature: domain Description: PHA0251 7 Location: 2383274-2384000 bp Feature: gene Location: 2423203-2423514 bp Ori: AFL78444.1 Feature: domain Description: DUF3876 Location: 2423236-2423488 bp Feature: domain Description: DUF3876 Location: 2423236-2423488 bp Feature: gene Location: 2423561-2424010 bp Feature: gene Location: 2424959-2426764 bp Ori: AFL78446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425223-2426045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425223-2426045 bp Feature: domain Description: Intron_maturas2 Location: 2426117-2426441 bp Feature: domain Description: Intron_maturas2 Location: 24261 1 7-2426441 bp Feature: domain Description: HNHc Note: nucleases Location: 2426594-2426741 bp Feature: domain Description: HNHc Note: nucleases Location: 2426594-2426741 bp Feature: gene Location: 3633898-3634278 bp Ori: AFL79439.1 Feature: domain Description: DUF2023 Location: 3633937-3634237 bp Feature: domain Description: DUF2023 Location: 3633937-3634237 bp Feature: gene Location: 3635070-3635156 bp Feature: gene Location: 3635338-3637137 bp Ori: AFL79441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635602-3636415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635602-363641 5 bp Feature: domain Description: Intron_maturas2 Location: 3636511-3636790 bp Feature: domain Description: Intron_maturas2 Location: 363651 1 -3636790 bp Feature: domain Description: HNHc Note: nucleases Location: 3636967-3637114 bp Feature: domain Description: HNHc Note: nucleases Location: 3636967-36371 1 4 bp Feature: gene Location: 3637683-3637964 bp Feature: gene Location: 3638244-3639134 bp Ori: AFL79443.1 Feature: domain Description: PHA02517 Location: 3638328-3639054 bp Feature: domain Description: PHA0251 7 Location: 3638328-3639054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIB-MDM2 (cl38907), RVT-DGRs, Prophage_tail (pfam06605), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), RVT_N (pfam13655), GIIM (pfam08388)
DUF3876 (pfam12992), FkpA (COG0545), PepSY_like (pfam11396), Avd_like (cd16376), GlpC (COG0247), cysKM (TIGR01136), DEXDc (smart00487), PHA02517 (putative transposase OrfB; Reviewed), DUF2023 (pfam09633)