myRT

myRT report for GCA_000265505.1_ASM26550v1

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Seq: CP003345.1 Bernardetia litoralis DSM 6794 chromosome, complete genome (4919337 bp)
Overview 1 RT 1: 12948-16299 bp 2 RT 2: 306699-315241 bp 3 RT 3: 4157845-4167485 bp Neighborhood of RT #1 [12948, 16299] Cas2 RVT-UG24 Neighborhood of RT #2 [306699, 315241] RVT-UG3 RVT-UG8 Neighborhood of RT #3 [4157845, 4167485] RssA RVT-Retrons WGR_DNA_ligase Feature: gene Location: 12948-13244 bp Ori: AFM02523.1 Feature: domain Description: Cas2 Location: 12951-13197 bp Feature: domain Description: Cas2 Location: 1 2951 -1 31 97 bp Feature: gene Location: 13270-13821 bp Feature: gene Location: 13871-14956 bp Ori: AFM02525.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 14366-14609 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1 4366-1 4609 bp Feature: gene Location: 14982-15200 bp Feature: gene Location: 15475-16299 bp Feature: gene Location: 306699-306980 bp Feature: gene Location: 308114-308791 bp Feature: gene Location: 309158-310663 bp Ori: AFM02751.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 309629-310169 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 309629-31 01 69 bp Feature: gene Location: 310667-312988 bp Ori: AFM02752.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 311204-311672 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 31 1 204-31 1 672 bp Feature: gene Location: 314108-314701 bp Feature: gene Location: 314855-315241 bp Feature: gene Location: 4157845-4158882 bp Ori: AFM05812.1 Feature: domain Description: RssA Location: 4157854-4158820 bp Feature: domain Description: RssA Location: 41 57854-41 58820 bp Feature: gene Location: 4158914-4159258 bp Feature: gene Location: 4160626-4162224 bp Ori: AFM05814.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4161160-4161823 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 61 1 60-41 61 823 bp Feature: gene Location: 4162287-4165682 bp Ori: AFM05815.1 Feature: domain Description: WGR_DNA_ligase Location: 4162305-4162527 bp Feature: domain Description: WGR_DNA_ligase Location: 41 62305-41 62527 bp Feature: gene Location: 4165797-4167485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2 (COG3512), RVT-UG24, RVT-UG3, RVT-UG8, RssA (COG1752), RVT-Retrons, WGR_DNA_ligase (cd07998)