myRT

myRT report for GCA_000270245.1_ASM27024v1

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Seq: AP012204.1 Microlunatus phosphovorus NM-1 DNA, complete genome (5683123 bp)
Overview 1 RT 1: 1241762-1244986 bp 2 RT 2: 2022100-2026263 bp 3 RT 3: 2863053-2868986 bp 4 RT 4: 5230189-5234837 bp Neighborhood of RT #1 [1241762, 1245027] Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [2022100, 2026263] PHA02517 InsE RVT_N RVT-GII GIIM Neighborhood of RT #3 [2863053, 2868988] DUF2252 hisS RVT-Retrons NagC CspC Neighborhood of RT #4 [5230189, 5234863] DDE_Tnp_1_assoc DDE_Tnp_1 RVT-Retrons InsE PHA02517 Feature: gene Location: 1241762-1242127 bp Feature: gene Location: 1242127-1242864 bp Ori: BAK34152.1 Feature: domain Description: Cas6 Location: 1242454-1242823 bp Feature: domain Description: Cas6 Location: 1 242454-1 242823 bp Feature: gene Location: 1242875-1244752 bp Ori: BAK34153.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1243088-1243685 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 243088-1 243685 bp Feature: domain Description: Cas1_I-II-III Location: 1243757-1244711 bp Feature: domain Description: Cas1 _I-II-III Location: 1 243757-1 24471 1 bp Feature: gene Location: 1244743-1245027 bp Ori: BAK34154.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 1244761-1244986 bp Feature: domain Description: Cas2_I_II_III Location: 1 244761 -1 244986 bp Feature: gene Location: 2022100-2022990 bp Ori: BAK34902.1 Feature: domain Description: PHA02517 Location: 2022166-2022964 bp Feature: domain Description: PHA0251 7 Location: 20221 66-2022964 bp Feature: gene Location: 2022990-2023283 bp Ori: BAK34903.1 Feature: domain Description: InsE Location: 2023005-2023272 bp Feature: domain Description: InsE Location: 2023005-2023272 bp Feature: gene Location: 2023425-2025236 bp Ori: BAK34904.1 Feature: domain Description: RVT_N Location: 2023509-2023746 bp Feature: domain Description: RVT_N Location: 2023509-2023746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023806-2024463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023806-2024463 bp Feature: domain Description: GIIM Note: maturase Location: 2024532-2024763 bp Feature: domain Description: GIIM Note: maturase Location: 2024532-2024763 bp Feature: gene Location: 2025691-2026122 bp Feature: gene Location: 2026108-2026263 bp Feature: gene Location: 2863053-2864531 bp Ori: BAK35672.1 Feature: domain Description: DUF2252 Location: 2863305-2864463 bp Feature: domain Description: DUF2252 Location: 2863305-2864463 bp Feature: gene Location: 2864641-2865972 bp Ori: BAK35673.1 Gene: hisS Feature: domain Description: hisS Location: 2864650-2865925 bp Feature: domain Description: hisS Location: 2864650-2865925 bp Feature: gene Location: 2866186-2867532 bp Ori: BAK35674.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2866675-2867296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2866675-2867296 bp Feature: gene Location: 2867903-2868664 bp Ori: BAK35675.1 Gene: ppgK Feature: domain Description: NagC Location: 2867915-2868656 bp Feature: domain Description: NagC Location: 286791 5-2868656 bp Feature: gene Location: 2868785-2868988 bp Ori: BAK35676.1 Feature: domain Description: CspC Location: 2868788-2868986 bp Feature: domain Description: CspC Location: 2868788-2868986 bp Feature: gene Location: 5230189-5231391 bp Ori: BAK37941.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 5230282-5230543 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 5230282-5230543 bp Feature: domain Description: DDE_Tnp_1 Location: 5230582-5231251 bp Feature: domain Description: DDE_Tnp_1 Location: 5230582-5231 251 bp Feature: gene Location: 5231565-5232380 bp Feature: gene Location: 5232430-5233401 bp Ori: BAK37943.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5232553-5233090 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5232553-5233090 bp Feature: gene Location: 5233680-5233973 bp Ori: BAK37944.1 Feature: domain Description: InsE Location: 5233695-5233962 bp Feature: domain Description: InsE Location: 5233695-5233962 bp Feature: gene Location: 5233973-5234863 bp Ori: BAK37945.1 Feature: domain Description: PHA02517 Location: 5234039-5234837 bp Feature: domain Description: PHA0251 7 Location: 5234039-5234837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6 (pfam09559), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2252 (pfam10009)
hisS (TIGR00442), RVT-Retrons, NagC (COG1940), CspC (COG1278), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609)