myRT

myRT report for GCA_000271665.2_ASM27166v2

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Seq: CP010978.1 Pelosinus fermentans JBW45, complete genome (5380816 bp)
Overview 1 RT 1: 1161454-1166530 bp 2 RT 2: 1209776-1217786 bp 3 RT 3: 2474463-2477626 bp 4 RT 4: 2566456-2571312 bp 5 RT 5: 3403157-3409571 bp 6 RT 6: 3801475-3811676 bp 7 RT 7: 4465065-4469539 bp Neighborhood of RT #1 [1161454, 1166530] HK_WalK HK_WalK RVT-GII GIIM OmpR Neighborhood of RT #2 [1209776, 1217786] Y1_Tnp RVT-GII RVT-GII GIIM QueG Neighborhood of RT #3 [2474463, 2477626] RVT-GII GIIM Neighborhood of RT #4 [2566456, 2571893] spore_V_K Resolvase Recombinase Zn_ribbon_recom RVT-GII COG4748 SAP Neighborhood of RT #5 [3403157, 3409651] RimL RVT-GII RVT-GII GIIM YzzA Neighborhood of RT #6 [3801475, 3811676] RVT-GII GIIM RVT-GII GIIM Y1_Tnp RVT-GII Neighborhood of RT #7 [4465065, 4469539] HTH_XRE RVT-UG17 SLATT_5 Feature: gene Location: 1161454-1161948 bp Feature: gene Location: 1162022-1163569 bp Ori: AJQ26298.1 Feature: domain Description: HK_WalK Location: 1162478-1162841 bp Feature: domain Description: HK_WalK Location: 1 1 62478-1 1 62841 bp Feature: domain Description: HK_WalK Location: 1162844-1163525 bp Feature: domain Description: HK_WalK Location: 1 1 62844-1 1 63525 bp Feature: gene Location: 1164275-1165519 bp Ori: AJQ26299.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164479-1165136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64479-1 1 651 36 bp Feature: domain Description: GIIM Note: maturase Location: 1165217-1165433 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 6521 7-1 1 65433 bp Feature: gene Location: 1165588-1166100 bp Ori: AJQ26300.1 Feature: domain Description: OmpR Location: 1165600-1166098 bp Feature: domain Description: OmpR Location: 1 1 65600-1 1 66098 bp Feature: gene Location: 1166399-1166530 bp Feature: gene Location: 1209776-1210555 bp Ori: AJQ26341.1 Feature: domain Description: Y1_Tnp Location: 1209815-1210145 bp Feature: domain Description: Y1 _Tnp Location: 1 20981 5-1 21 01 45 bp Feature: gene Location: 1210810-1211103 bp Feature: gene Location: 1212068-1213012 bp Ori: AJQ26343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1212341-1212983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 2341 -1 21 2983 bp Feature: gene Location: 1213528-1214772 bp Ori: AJQ26344.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213732-1214389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 3732-1 21 4389 bp Feature: domain Description: GIIM Note: maturase Location: 1214470-1214686 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 4470-1 21 4686 bp Feature: gene Location: 1216202-1217242 bp Ori: AJQ26345.1 Feature: domain Description: QueG Location: 1216214-1217216 bp Feature: domain Description: QueG Location: 1 21 621 4-1 21 721 6 bp Feature: gene Location: 1217574-1217786 bp Feature: gene Location: 2474463-2475707 bp Ori: AJQ27522.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2474667-2475324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2474667-2475324 bp Feature: domain Description: GIIM Note: maturase Location: 2475405-2475621 bp Feature: domain Description: GIIM Note: maturase Location: 2475405-2475621 bp Feature: gene Location: 2476811-2477002 bp Feature: gene Location: 2477168-2477626 bp Feature: gene Location: 2566456-2567019 bp Ori: AJQ27627.1 Feature: domain Description: spore_V_K Location: 2566612-2567011 bp Feature: domain Description: spore_V_K Location: 256661 2-256701 1 bp Feature: gene Location: 2567060-2568589 bp Ori: AJQ27628.1 Feature: domain Description: Resolvase Location: 2567069-2567507 bp Feature: domain Description: Resolvase Location: 2567069-2567507 bp Feature: domain Description: Recombinase Location: 2567576-2567897 bp Feature: domain Description: Recombinase Location: 2567576-2567897 bp Feature: domain Description: Zn_ribbon_recom Location: 2567936-2568131 bp Feature: domain Description: Zn_ribbon_recom Location: 2567936-25681 31 bp Feature: gene Location: 2568929-2569459 bp Ori: AJQ27629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569289-2569403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569289-2569403 bp Feature: gene Location: 2569507-2570673 bp Ori: AJQ27630.1 Feature: domain Description: COG4748 Location: 2569510-2570215 bp Feature: domain Description: COG4748 Location: 256951 0-257021 5 bp Feature: gene Location: 2570790-2571893 bp Ori: AJQ27631.1 Feature: domain Description: SAP Location: 2571228-2571312 bp Feature: domain Description: SAP Location: 2571 228-2571 31 2 bp Feature: gene Location: 3403157-3403738 bp Ori: AJQ28405.1 Feature: domain Description: RimL Location: 3403295-3403709 bp Feature: domain Description: RimL Location: 3403295-3403709 bp Feature: gene Location: 3403967-3404371 bp Feature: gene Location: 3405233-3406177 bp Ori: AJQ28407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3405506-3406148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3405506-34061 48 bp Feature: gene Location: 3406693-3407937 bp Ori: AJQ28408.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3406897-3407554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3406897-3407554 bp Feature: domain Description: GIIM Note: maturase Location: 3407635-3407851 bp Feature: domain Description: GIIM Note: maturase Location: 3407635-3407851 bp Feature: gene Location: 3409211-3409651 bp Ori: AJQ28409.1 Feature: domain Description: YzzA Location: 3409217-3409571 bp Feature: domain Description: YzzA Location: 340921 7-3409571 bp Feature: gene Location: 3801475-3801714 bp Feature: gene Location: 3801725-3802144 bp Feature: gene Location: 3802242-3803609 bp Ori: AJQ28766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3802563-3803220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3802563-3803220 bp Feature: domain Description: GIIM Note: maturase Location: 3803301-3803520 bp Feature: domain Description: GIIM Note: maturase Location: 3803301 -3803520 bp Feature: gene Location: 3804681-3805925 bp Ori: AJQ28767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804885-3805542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804885-3805542 bp Feature: domain Description: GIIM Note: maturase Location: 3805623-3805839 bp Feature: domain Description: GIIM Note: maturase Location: 3805623-3805839 bp Feature: gene Location: 3807729-3807968 bp Feature: gene Location: 3808064-3808924 bp Ori: AJQ28769.1 Feature: domain Description: Y1_Tnp Location: 3808097-3808433 bp Feature: domain Description: Y1 _Tnp Location: 3808097-3808433 bp Feature: gene Location: 3809146-3809454 bp Ori: AJQ28770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3809350-3809446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3809350-3809446 bp Feature: gene Location: 3810618-3810938 bp Feature: gene Location: 3810945-3811676 bp Feature: gene Location: 4465065-4465364 bp Feature: gene Location: 4465504-4465902 bp Ori: AJQ29351.1 Feature: domain Description: HTH_XRE Location: 4465528-4465690 bp Feature: domain Description: HTH_XRE Location: 4465528-4465690 bp Feature: gene Location: 4466141-4467493 bp Ori: AJQ29352.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4466384-4466972 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4466384-4466972 bp Feature: gene Location: 4467490-4468089 bp Ori: AJQ29353.1 Feature: domain Description: SLATT_5 Location: 4467496-4468072 bp Feature: domain Description: SLATT_5 Location: 4467496-4468072 bp Feature: gene Location: 4468550-4469539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HK_WalK (NF033092), RVT-GII, GIIM (pfam08388), OmpR (COG0745), Y1_Tnp (pfam01797), QueG (COG1600), spore_V_K (TIGR02881), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
COG4748 (Uncharacterized protein, contains restriction enzyme R protein N terminal (HSDR_N) domain ), SAP (smart00513), RimL (COG1670), YzzA (COG3871), HTH_XRE (smart00530), RVT-UG17, SLATT_5 (pfam18160)