myRT

myRT report for GCA_000281215.1_ASM28121v1

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Seq: CP003734.1 Pseudomonas putida DOT-T1E, complete genome (6260702 bp)
Overview 1 RT 1: 4527281-4535027 bp 2 RT 2: 4997547-5000742 bp Neighborhood of RT #1 [4527281, 4535278] Spo0J DUF932 RVT-UG3 RVT-UG8 RadC YhcG Neighborhood of RT #2 [4997547, 5000801] HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII M20_Acy1-like YD_repeat_2x YD_repeat_2x Feature: gene Location: 4527281-4528255 bp Ori: AFO49978.1 Gene: yfjB Feature: domain Description: Spo0J Location: 4527347-4528040 bp Feature: domain Description: Spo0J Location: 4527347-4528040 bp Feature: gene Location: 4528335-4529162 bp Ori: AFO49979.1 Feature: domain Description: DUF932 Location: 4528446-4529127 bp Feature: domain Description: DUF932 Location: 4528446-45291 27 bp Feature: gene Location: 4529774-4531057 bp Ori: AFO49980.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4530077-4530575 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4530077-4530575 bp Feature: gene Location: 4531067-4533022 bp Ori: AFO49981.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4531589-4532030 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4531 589-4532030 bp Feature: gene Location: 4533267-4533776 bp Ori: AFO49982.1 Feature: domain Description: RadC Location: 4533318-4533774 bp Feature: domain Description: RadC Location: 453331 8-4533774 bp Feature: gene Location: 4534112-4535278 bp Ori: AFO49983.1 Feature: domain Description: YhcG Location: 4534550-4535027 bp Feature: domain Description: YhcG Location: 4534550-4535027 bp Feature: gene Location: 4997547-4998497 bp Ori: AFO50396.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 4997553-4997682 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 4997553-4997682 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 4997748-4998471 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 4997748-4998471 bp Feature: gene Location: 4998670-4999200 bp Ori: AFO50397.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4998787-4999189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4998787-49991 89 bp Feature: gene Location: 4999350-5000384 bp Ori: AFO50398.1 Feature: domain Description: M20_Acy1-like Location: 4999401-5000379 bp Feature: domain Description: M20_Acy1 -like Location: 4999401 -5000379 bp Feature: gene Location: 5000493-5000801 bp Ori: AFO50399.1 Feature: domain Description: YD_repeat_2x Location: 5000499-5000598 bp Feature: domain Description: YD_repeat_2x Location: 5000499-5000598 bp Feature: domain Description: YD_repeat_2x Location: 5000667-5000742 bp Feature: domain Description: YD_repeat_2x Location: 5000667-5000742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), DUF932 (pfam06067), RVT-UG3, RVT-UG8, RadC (pfam04002), YhcG (COG4804), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, M20_Acy1-like (cd08660)
YD_repeat_2x (TIGR01643)