myRT

myRT report for GCA_000283675.1_ASM28367v1

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Seq: AP007210.1 Bacillus cereus NC7401 plasmid pNCcld DNA, complete sequence, strain: NC7401 (270082 bp)
Overview 1 RT 1: 8099-12991 bp 2 RT 2: 74715-79947 bp 3 RT 3: 84736-92574 bp 4 RT 4: 147147-155627 bp Neighborhood of RT #1 [8099, 12991] MTS RVT-GII HNHc Neighborhood of RT #2 [74715, 79947] beta_clamp RVT-GII COG4712 Neighborhood of RT #3 [84736, 92574] nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Neighborhood of RT #4 [147147, 155627] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 8099-8326 bp Feature: gene Location: 8342-9463 bp Ori: BAL21218.1 Feature: domain Description: MTS Location: 8438-8801 bp Feature: domain Description: MTS Location: 8438-8801 bp Feature: gene Location: 9608-11536 bp Ori: BAL21219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9929-10664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9929-1 0664 bp Feature: domain Description: HNHc Note: nucleases Location: 11255-11420 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 255-1 1 420 bp Feature: gene Location: 12419-12556 bp Feature: gene Location: 12578-12991 bp Feature: gene Location: 74715-75827 bp Ori: BAL21270.1 Feature: domain Description: beta_clamp Location: 74718-75822 bp Feature: domain Description: beta_clamp Location: 7471 8-75822 bp Feature: gene Location: 75908-76435 bp Feature: gene Location: 76513-78411 bp Ori: BAL21272.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76828-77530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76828-77530 bp Feature: gene Location: 79173-79529 bp Ori: BAL21273.1 Feature: domain Description: COG4712 Location: 79182-79524 bp Feature: domain Description: COG471 2 Location: 791 82-79524 bp Feature: gene Location: 79552-79947 bp Feature: gene Location: 84736-84870 bp Feature: gene Location: 85141-86091 bp Ori: BAL21283.1 Feature: domain Description: nuc_hydro Location: 85156-86062 bp Feature: domain Description: nuc_hydro Location: 851 56-86062 bp Feature: gene Location: 86811-88457 bp Ori: BAL21284.1 Feature: domain Description: RVT_N Location: 86853-87090 bp Feature: domain Description: RVT_N Location: 86853-87090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87144-87804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871 44-87804 bp Feature: domain Description: GIIM Note: maturase Location: 87873-88104 bp Feature: domain Description: GIIM Note: maturase Location: 87873-881 04 bp Feature: gene Location: 88670-92170 bp Ori: BAL21285.1 Feature: domain Description: TraG-D_C Location: 90287-90647 bp Feature: domain Description: TraG-D_C Location: 90287-90647 bp Feature: domain Description: Ftsk_gamma Location: 91055-91232 bp Feature: domain Description: Ftsk_gamma Location: 91 055-91 232 bp Feature: domain Description: Ftsk_gamma Location: 91364-91499 bp Feature: domain Description: Ftsk_gamma Location: 91 364-91 499 bp Feature: gene Location: 92188-92574 bp Feature: gene Location: 147147-147809 bp Ori: BAL21352.1 Feature: domain Description: TraC-F-type Location: 147261-147732 bp Feature: domain Description: TraC-F-type Location: 1 47261 -1 47732 bp Feature: gene Location: 148083-148241 bp Feature: gene Location: 148525-150357 bp Ori: BAL21354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148825-149530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48825-1 49530 bp Feature: domain Description: HNHc Note: nucleases Location: 150109-150241 bp Feature: domain Description: HNHc Note: nucleases Location: 1 501 09-1 50241 bp Feature: gene Location: 150648-151616 bp Ori: BAL21355.1 Feature: domain Description: TraC-F-type Location: 150675-151455 bp Feature: domain Description: TraC-F-type Location: 1 50675-1 51 455 bp Feature: gene Location: 151647-155627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MTS (pfam05175), RVT-GII, HNHc (smart00507), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), nuc_hydro (cl00226), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843)
TraC-F-type (TIGR02746)

Seq: AP007209.1 Bacillus cereus NC7401 genomic DNA, complete genome (5221581 bp)
Overview 1 RT 1: 902534-907523 bp 2 RT 2: 940520-948534 bp 3 RT 3: 1695772-1701970 bp 4 RT 4: 3071642-3077450 bp 5 RT 5: 3143604-3149784 bp 6 RT 6: 3396745-3406375 bp 7 RT 7: 3737951-3743268 bp 8 RT 8: 3832992-3836837 bp Neighborhood of RT #1 [902534, 907534] PRK12856 metallo-hydrolase-like_MBL-fold RVT-GII HNHc TTHA1623-like_MBL-fold HxlR Neighborhood of RT #2 [940520, 948534] PRK06187 Big_8 RVT-GII HNHc Collagen_bind SpaA CollagenBindB COG4932 Neighborhood of RT #3 [1695772, 1701975] PP2C_2 asn_synth_AEB RVT-GII HNHc AsnB PRK06811 Neighborhood of RT #4 [3071642, 3077450] Hydrolase_4 HTH_3 TPR RVT_N RVT-GII GIIM GrpB Neighborhood of RT #5 [3143604, 3149819] PRK02487 stp RVT_N RVT-GII GIIM IDEAL Neighborhood of RT #6 [3396745, 3406375] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc Neighborhood of RT #7 [3737951, 3743282] CAP_assoc_N CAP_bacterial YugN RVT-GII HNHc amiF Neighborhood of RT #8 [3832992, 3836851] RVT-GII HNHc nitrilase_5 Feature: gene Location: 902534-902845 bp Ori: BAL16629.1 Feature: domain Description: PRK12856 Location: 902537-902843 bp Feature: domain Description: PRK12 856 Location: 902 537-902 843 bp Feature: gene Location: 903236-903349 bp Ori: BAL16630.1 Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 903251-903338 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 9032 51-903338 bp Feature: gene Location: 904065-905897 bp Ori: BAL16631.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904365-905070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904365-905070 bp Feature: domain Description: HNHc Note: nucleases Location: 905649-905781 bp Feature: domain Description: HNHc Note: nucleases Location: 905649-905781 bp Feature: gene Location: 906137-906550 bp Ori: BAL16632.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 906140-906536 bp Feature: domain Description: TTHA162 3-like_MBL-fold Location: 906140-906536 bp Feature: gene Location: 907190-907534 bp Ori: BAL16633.1 Feature: domain Description: HxlR Location: 907241-907523 bp Feature: domain Description: HxlR Location: 9072 41-90752 3 bp Feature: gene Location: 940520-942076 bp Ori: BAL16664.1 Feature: domain Description: PRK06187 Location: 940523-942065 bp Feature: domain Description: PRK06187 Location: 94052 3-942 065 bp Feature: gene Location: 942639-943202 bp Ori: BAL16665.1 Feature: domain Description: Big_8 Location: 942840-943089 bp Feature: domain Description: Big_8 Location: 942 840-943089 bp Feature: gene Location: 943918-945750 bp Ori: BAL16666.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944218-944923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9442 18-94492 3 bp Feature: domain Description: HNHc Note: nucleases Location: 945502-945634 bp Feature: domain Description: HNHc Note: nucleases Location: 945502 -945634 bp Feature: gene Location: 945930-947981 bp Ori: BAL16667.1 Feature: domain Description: Collagen_bind Location: 945933-946245 bp Feature: domain Description: Collagen_bind Location: 945933-9462 45 bp Feature: domain Description: SpaA Location: 946383-946584 bp Feature: domain Description: SpaA Location: 946383-946584 bp Feature: domain Description: CollagenBindB Location: 946632-946878 bp Feature: domain Description: CollagenBindB Location: 946632 -946878 bp Feature: domain Description: COG4932 Location: 947487-947979 bp Feature: domain Description: COG4932 Location: 947487-947979 bp Feature: gene Location: 948070-948534 bp Feature: gene Location: 1695772-1696599 bp Ori: BAL17487.1 Feature: domain Description: PP2C_2 Location: 1696144-1696483 bp Feature: domain Description: PP2 C_2 Location: 1696144-1696483 bp Feature: gene Location: 1696642-1698324 bp Ori: BAL17488.1 Feature: domain Description: asn_synth_AEB Location: 1696672-1698100 bp Feature: domain Description: asn_synth_AEB Location: 1696672 -1698100 bp Feature: gene Location: 1698405-1700237 bp Ori: BAL17489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1698705-1699410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1698705-1699410 bp Feature: domain Description: HNHc Note: nucleases Location: 1699989-1700121 bp Feature: domain Description: HNHc Note: nucleases Location: 1699989-170012 1 bp Feature: gene Location: 1700953-1701150 bp Ori: BAL17490.1 Feature: domain Description: AsnB Location: 1700962-1701139 bp Feature: domain Description: AsnB Location: 1700962 -1701139 bp Feature: gene Location: 1701409-1701975 bp Ori: BAL17491.1 Feature: domain Description: PRK06811 Location: 1701412-1701970 bp Feature: domain Description: PRK06811 Location: 1701412 -1701970 bp Feature: gene Location: 3071642-3072658 bp Ori: BAL18934.1 Feature: domain Description: Hydrolase_4 Location: 3071804-3072464 bp Feature: domain Description: Hydrolase_4 Location: 3071804-3072 464 bp Feature: gene Location: 3072671-3073795 bp Ori: BAL18935.1 Feature: domain Description: HTH_3 Location: 3072701-3072863 bp Feature: domain Description: HTH_3 Location: 3072 701-3072 863 bp Feature: domain Description: TPR Location: 3073427-3073550 bp Feature: domain Description: TPR Location: 307342 7-3073550 bp Feature: gene Location: 3074155-3075801 bp Ori: BAL18936.1 Feature: domain Description: RVT_N Location: 3074197-3074434 bp Feature: domain Description: RVT_N Location: 3074197-3074434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074488-3075148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074488-3075148 bp Feature: domain Description: GIIM Note: maturase Location: 3075217-3075448 bp Feature: domain Description: GIIM Note: maturase Location: 30752 17-3075448 bp Feature: gene Location: 3076518-3077048 bp Ori: BAL18937.1 Feature: domain Description: GrpB Location: 3076530-3077004 bp Feature: domain Description: GrpB Location: 3076530-3077004 bp Feature: gene Location: 3077280-3077450 bp Feature: gene Location: 3143604-3144080 bp Ori: BAL19009.1 Feature: domain Description: PRK02487 Location: 3143619-3144078 bp Feature: domain Description: PRK02 487 Location: 3143619-3144078 bp Feature: gene Location: 3144654-3145973 bp Ori: BAL19010.1 Feature: domain Description: stp Location: 3144741-3145941 bp Feature: domain Description: stp Location: 3144741-3145941 bp Feature: gene Location: 3147047-3148693 bp Ori: BAL19011.1 Feature: domain Description: RVT_N Location: 3147089-3147326 bp Feature: domain Description: RVT_N Location: 3147089-314732 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3147380-3148040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3147380-3148040 bp Feature: domain Description: GIIM Note: maturase Location: 3148109-3148340 bp Feature: domain Description: GIIM Note: maturase Location: 3148109-3148340 bp Feature: gene Location: 3149323-3149487 bp Feature: gene Location: 3149484-3149819 bp Ori: BAL19013.1 Feature: domain Description: IDEAL Location: 3149688-3149784 bp Feature: domain Description: IDEAL Location: 3149688-3149784 bp Feature: gene Location: 3396745-3396912 bp Feature: gene Location: 3397081-3402654 bp Ori: BAL19273.1 Feature: domain Description: B_ant_repeat Location: 3397084-3397216 bp Feature: domain Description: B_ant_repeat Location: 3397084-33972 16 bp Feature: domain Description: B_ant_repeat Location: 3397456-3397609 bp Feature: domain Description: B_ant_repeat Location: 3397456-3397609 bp Feature: domain Description: B_ant_repeat Location: 3397852-3398008 bp Feature: domain Description: B_ant_repeat Location: 3397852 -3398008 bp Feature: domain Description: B_ant_repeat Location: 3398248-3398404 bp Feature: domain Description: B_ant_repeat Location: 33982 48-3398404 bp Feature: domain Description: B_ant_repeat Location: 3398644-3398800 bp Feature: domain Description: B_ant_repeat Location: 3398644-3398800 bp Feature: domain Description: B_ant_repeat Location: 3399040-3399193 bp Feature: domain Description: B_ant_repeat Location: 3399040-3399193 bp Feature: domain Description: B_ant_repeat Location: 3399436-3399592 bp Feature: domain Description: B_ant_repeat Location: 3399436-3399592 bp Feature: domain Description: B_ant_repeat Location: 3399832-3399988 bp Feature: domain Description: B_ant_repeat Location: 3399832 -3399988 bp Feature: domain Description: B_ant_repeat Location: 3400228-3400384 bp Feature: domain Description: B_ant_repeat Location: 34002 2 8-3400384 bp Feature: domain Description: B_ant_repeat Location: 3400624-3400777 bp Feature: domain Description: B_ant_repeat Location: 340062 4-3400777 bp Feature: domain Description: B_ant_repeat Location: 3401020-3401176 bp Feature: domain Description: B_ant_repeat Location: 340102 0-3401176 bp Feature: domain Description: B_ant_repeat Location: 3401416-3401572 bp Feature: domain Description: B_ant_repeat Location: 3401416-3401572 bp Feature: domain Description: B_ant_repeat Location: 3401812-3401968 bp Feature: domain Description: B_ant_repeat Location: 3401812 -3401968 bp Feature: domain Description: B_ant_repeat Location: 3402208-3402361 bp Feature: domain Description: B_ant_repeat Location: 3402 2 08-3402 361 bp Feature: gene Location: 3402823-3404751 bp Ori: BAL19274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3403144-3403879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3403144-3403879 bp Feature: domain Description: HNHc Note: nucleases Location: 3404470-3404635 bp Feature: domain Description: HNHc Note: nucleases Location: 3404470-3404635 bp Feature: gene Location: 3405758-3406171 bp Feature: gene Location: 3406184-3406375 bp Feature: gene Location: 3737951-3738985 bp Ori: BAL19627.1 Feature: domain Description: CAP_assoc_N Location: 3738131-3738548 bp Feature: domain Description: CAP_assoc_N Location: 3738131-3738548 bp Feature: domain Description: CAP_bacterial Location: 3738632-3738974 bp Feature: domain Description: CAP_bacterial Location: 3738632 -3738974 bp Feature: gene Location: 3739193-3739558 bp Ori: BAL19628.1 Feature: domain Description: YugN Location: 3739211-3739460 bp Feature: domain Description: YugN Location: 37392 11-3739460 bp Feature: gene Location: 3740345-3742177 bp Ori: BAL19629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3740645-3741350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3740645-3741350 bp Feature: domain Description: HNHc Note: nucleases Location: 3741929-3742061 bp Feature: domain Description: HNHc Note: nucleases Location: 374192 9-3742 061 bp Feature: gene Location: 3742461-3742619 bp Feature: gene Location: 3742893-3743282 bp Ori: BAL19631.1 Feature: domain Description: amiF Location: 3742896-3743268 bp Feature: domain Description: amiF Location: 3742 896-37432 68 bp Feature: gene Location: 3832992-3833168 bp Feature: gene Location: 3833095-3833310 bp Feature: gene Location: 3833464-3835296 bp Ori: BAL19737.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3833764-3834469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3833764-3834469 bp Feature: domain Description: HNHc Note: nucleases Location: 3835048-3835180 bp Feature: domain Description: HNHc Note: nucleases Location: 3835048-3835180 bp Feature: gene Location: 3835580-3835738 bp Feature: gene Location: 3836012-3836851 bp Ori: BAL19739.1 Feature: domain Description: nitrilase_5 Location: 3836186-3836837 bp Feature: domain Description: nitrilase_5 Location: 3836186-3836837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12856 (hypothetical protein; Provisional), metallo-hydrolase-like_MBL-fold (cl23716), RVT-GII, HNHc (smart00507), TTHA1623-like_MBL-fold (cd16322), HxlR (pfam01638), PRK06187 (long-chain-fatty-acid--CoA ligase; Validated), Big_8 (pfam17961), Collagen_bind (pfam05737), SpaA (pfam17802)
CollagenBindB (cl15753), COG4932 (Uncharacterized surface anchored protein ), PP2C_2 (pfam13672), asn_synth_AEB (TIGR01536), AsnB (COG0367), PRK06811 (RNA polymerase factor sigma-70; Validated), Hydrolase_4 (pfam12146), HTH_3 (pfam01381), TPR (smart00028), RVT_N (pfam13655)
GIIM (pfam08388), GrpB (pfam04229), PRK02487 (heme-degrading domain-containing protein), stp (TIGR00814), IDEAL (smart00914), B_ant_repeat (TIGR01451), CAP_assoc_N (pfam14504), CAP_bacterial (cd05379), YugN (pfam08868), amiF (PRK13287)
nitrilase_5 (cd07583)