myRT

myRT report for GCA_000284375.1_ASM28437v1

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Seq: AP012206.1 Bradyrhizobium japonicum USDA 6 DNA, complete genome (9207384 bp)
Overview 1 RT 1: 8063936-8068970 bp 2 RT 2: 8150695-8156719 bp 3 RT 3: 8264249-8272697 bp 4 RT 4: 9141814-9146485 bp 5 RT 5: 9194033-9197142 bp Neighborhood of RT #1 [8063936, 8068970] Tra5 HTH_Tnp_1 RVT-GII GIIM Neighborhood of RT #2 [8150695, 8156796] PRK06215 RVT-GII GIIM LptD Neighborhood of RT #3 [8264249, 8272705] CpaD RVT-GII RVT-GII IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #4 [9141814, 9146547] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #5 [9194033, 9197142] MmsB RVT-GII RVT-GII RVT-GII DDE_Tnp_1_4 Feature: gene Location: 8063936-8064823 bp Ori: BAL13046.1 Feature: domain Description: Tra5 Location: 8063957-8064701 bp Feature: domain Description: Tra5 Location: 8063957-8064701 bp Feature: gene Location: 8064786-8065040 bp Ori: BAL13047.1 Feature: domain Description: HTH_Tnp_1 Location: 8064792-8064999 bp Feature: domain Description: HTH_Tnp_1 Location: 8064792-8064999 bp Feature: gene Location: 8065217-8066461 bp Ori: BAL13048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8065418-8066075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806541 8-8066075 bp Feature: domain Description: GIIM Note: maturase Location: 8066153-8066381 bp Feature: domain Description: GIIM Note: maturase Location: 80661 53-8066381 bp Feature: gene Location: 8067970-8068203 bp Feature: gene Location: 8068671-8068970 bp Feature: gene Location: 8150695-8151432 bp Ori: BAL13128.1 Feature: domain Description: PRK06215 Location: 8150704-8151427 bp Feature: domain Description: PRK0621 5 Location: 81 50704-81 51 427 bp Feature: gene Location: 8151673-8152041 bp Feature: gene Location: 8152361-8153542 bp Ori: BAL13130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8152562-8153219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 52562-81 5321 9 bp Feature: domain Description: GIIM Note: maturase Location: 8153294-8153501 bp Feature: domain Description: GIIM Note: maturase Location: 81 53294-81 53501 bp Feature: gene Location: 8154134-8154325 bp Feature: gene Location: 8154343-8156796 bp Ori: BAL13132.1 Feature: domain Description: LptD Location: 8154523-8156719 bp Feature: domain Description: LptD Location: 81 54523-81 5671 9 bp Feature: gene Location: 8264249-8264911 bp Ori: BAL13230.1 Feature: domain Description: CpaD Location: 8264282-8264822 bp Feature: domain Description: CpaD Location: 8264282-8264822 bp Feature: gene Location: 8265107-8267422 bp Feature: gene Location: 8267715-8269097 bp Ori: BAL13232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8268042-8268732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8268042-8268732 bp Feature: gene Location: 8270095-8270577 bp Ori: BAL13233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8270320-8270416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8270320-827041 6 bp Feature: gene Location: 8270631-8271341 bp Ori: BAL13234.1 Feature: domain Description: IstB_IS21_ATP Location: 8270652-8270736 bp Feature: domain Description: IstB_IS21 _ATP Location: 8270652-8270736 bp Feature: domain Description: IstB_IS21 Location: 8270742-8271267 bp Feature: domain Description: IstB_IS21 Location: 8270742-8271 267 bp Feature: gene Location: 8271347-8272705 bp Ori: BAL13235.1 Feature: domain Description: COG4584 Location: 8271422-8272223 bp Feature: domain Description: COG4584 Location: 8271 422-8272223 bp Feature: domain Description: COG4584 Location: 8272253-8272697 bp Feature: domain Description: COG4584 Location: 8272253-8272697 bp Feature: gene Location: 9141814-9142680 bp Ori: BAL14048.1 Feature: domain Description: INT_RitC_C_like Location: 9141829-9142384 bp Feature: domain Description: INT_RitC_C_like Location: 91 41 829-91 42384 bp Feature: gene Location: 9142373-9143098 bp Ori: BAL14049.1 Feature: domain Description: DDE_Tnp_IS66 Location: 9142391-9142826 bp Feature: domain Description: DDE_Tnp_IS66 Location: 91 42391 -91 42826 bp Feature: gene Location: 9143335-9144663 bp Ori: BAL14050.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9143626-9144289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 43626-91 44289 bp Feature: domain Description: GIIM Note: maturase Location: 9144355-9144577 bp Feature: domain Description: GIIM Note: maturase Location: 91 44355-91 44577 bp Feature: gene Location: 9144599-9145435 bp Ori: BAL14051.1 Feature: domain Description: LomR Location: 9144635-9145346 bp Feature: domain Description: LomR Location: 91 44635-91 45346 bp Feature: gene Location: 9145879-9146547 bp Ori: BAL14052.1 Feature: domain Description: PHA02518 Location: 9145888-9146485 bp Feature: domain Description: PHA0251 8 Location: 91 45888-91 46485 bp Feature: gene Location: 9194033-9194227 bp Ori: BAL14113.1 Feature: domain Description: MmsB Location: 9194045-9194156 bp Feature: domain Description: MmsB Location: 91 94045-91 941 56 bp Feature: gene Location: 9194197-9194526 bp Feature: gene Location: 9194533-9195093 bp Ori: BAL14115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9194941-9195019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 94941 -91 9501 9 bp Feature: gene Location: 9195020-9195292 bp Ori: BAL14116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9195023-9195281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 95023-91 95281 bp Feature: gene Location: 9195424-9196011 bp Ori: BAL14117.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9195427-9195634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 95427-91 95634 bp Feature: gene Location: 9196110-9196565 bp Ori: BAL14118.1 Feature: domain Description: DDE_Tnp_1_4 Location: 9196146-9196320 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 91 961 46-91 96320 bp Feature: gene Location: 9196738-9197142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional), LptD (COG1452), CpaD (COG5461), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase )
INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), MmsB (COG2084), DDE_Tnp_1_4 (pfam13701)