myRT

myRT report for GCA_000285655.3_EC958.v1

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Seq: HG941718.1 Escherichia coli ST131 strain EC958 chromosome, complete genome (5109767 bp)
Overview 1 RT 1: 1346567-1352918 bp 2 RT 2: 4155643-4159590 bp Neighborhood of RT #1 [1346567, 1352918] PRK11388 RVT-Retrons Neighborhood of RT #2 [4155643, 4159592] zinc_ribbon_11 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1346567-1348495 bp Ori: CDN81706.1 Feature: domain Description: PRK11388 Location: 1346579-1348487 bp Feature: domain Description: PRK1 1 388 Location: 1 346579-1 348487 bp Feature: gene Location: 1348977-1349216 bp Feature: gene Location: 1349772-1351544 bp Ori: CDN81708.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1349931-1350549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 349931 -1 350549 bp Feature: gene Location: 1351566-1351733 bp Feature: gene Location: 1351779-1352918 bp Feature: gene Location: 4155643-4156125 bp Ori: CDN84438.1 Feature: domain Description: zinc_ribbon_11 Location: 4155742-4156060 bp Feature: domain Description: zinc_ribbon_1 1 Location: 41 55742-41 56060 bp Feature: gene Location: 4156109-4156555 bp Ori: CDN84439.1 Feature: domain Description: PHA02517 Location: 4156112-4156553 bp Feature: domain Description: PHA0251 7 Location: 41 561 1 2-41 56553 bp Feature: gene Location: 4156672-4158195 bp Ori: CDN84440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4156945-4157677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 56945-41 57677 bp Feature: domain Description: GIIM Note: maturase Location: 4157752-4157950 bp Feature: domain Description: GIIM Note: maturase Location: 41 57752-41 57950 bp Feature: gene Location: 4158787-4159266 bp Ori: CDN84441.1 Feature: domain Description: PHA02517 Location: 4158847-4159201 bp Feature: domain Description: PHA0251 7 Location: 41 58847-41 59201 bp Feature: gene Location: 4159266-4159592 bp Ori: CDN84442.1 Feature: domain Description: InsE Location: 4159269-4159590 bp Feature: domain Description: InsE Location: 41 59269-41 59590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: HG941719.1 Escherichia coli ST131 strain EC958 plasmid pEC958, complete sequence (135602 bp)
Overview 1 RT 1: 14552-19451 bp Neighborhood of RT #1 [14552, 19456] AdoMet_MTases RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 14552-15115 bp Ori: CDN85369.1 Feature: domain Description: AdoMet_MTases Location: 14714-15008 bp Feature: domain Description: AdoMet_MTases Location: 14714-15008 bp Feature: gene Location: 15362-15751 bp Feature: gene Location: 16631-18532 bp Ori: CDN85371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16898-17729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16898-1772 9 bp Feature: domain Description: Intron_maturas2 Location: 17843-18101 bp Feature: domain Description: Intron_maturas2 Location: 17843-18101 bp Feature: domain Description: HNHc Note: nucleases Location: 18275-18437 bp Feature: domain Description: HNHc Note: nucleases Location: 182 75-18437 bp Feature: gene Location: 18742-19167 bp Ori: CDN85372.1 Feature: domain Description: PRK13732 Location: 18745-19165 bp Feature: domain Description: PRK13732 Location: 18745-19165 bp Feature: gene Location: 19223-19456 bp Ori: CDN85373.1 Feature: domain Description: DUF905 Location: 19253-19451 bp Feature: domain Description: DUF905 Location: 192 53-19451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)