myRT

myRT report for GCA_000293885.3_ASM29388v3

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Seq: CP010945.1 Pseudomonas fluorescens NCIMB 11764, complete genome (6998154 bp)
Overview 1 RT 1: 169264-176188 bp 2 RT 2: 1101486-1107586 bp 3 RT 3: 2806811-2813855 bp 4 RT 4: 2890432-2894107 bp 5 RT 5: 3206366-3210024 bp Neighborhood of RT #1 [169264, 176271] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #2 [1101486, 1107586] DUF2790 RVT-GII GIIM RVT-GII GIIM OprD Neighborhood of RT #3 [2806811, 2813863] CAP_ED PtrB RVT_N RVT-GII GIIM HNHc GATase_4 Neighborhood of RT #4 [2890432, 2894107] RVT-Retrons Neighborhood of RT #5 [3206366, 3210188] YbjQ_1 RVT-GII GIIM Gly-zipper_Omp Gly-zipper_Omp Gly-zipper_Omp Rick_17kDa_Anti Feature: gene Location: 169264-170808 bp Ori: AKV05003.1 Feature: domain Description: CHD Location: 169480-169894 bp Feature: domain Description: CHD Location: 1 69480-1 69894 bp Feature: domain Description: CHD Location: 170122-170611 bp Feature: domain Description: CHD Location: 1 701 22-1 7061 1 bp Feature: gene Location: 172327-172653 bp Feature: gene Location: 172803-174071 bp Ori: AKV05004.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173016-173673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7301 6-1 73673 bp Feature: domain Description: GIIM Note: maturase Location: 173751-173973 bp Feature: domain Description: GIIM Note: maturase Location: 1 73751 -1 73973 bp Feature: gene Location: 174460-175101 bp Ori: AKV05005.1 Feature: domain Description: DUF772 Location: 174610-174805 bp Feature: domain Description: DUF772 Location: 1 7461 0-1 74805 bp Feature: gene Location: 175444-176271 bp Ori: AKV05006.1 Feature: domain Description: ABC_phnC Location: 175474-176188 bp Feature: domain Description: ABC_phnC Location: 1 75474-1 761 88 bp Feature: gene Location: 1101486-1101683 bp Feature: gene Location: 1101826-1102158 bp Ori: AKV05804.1 Feature: domain Description: DUF2790 Location: 1101868-1102144 bp Feature: domain Description: DUF2790 Location: 1 1 01 868-1 1 021 44 bp Feature: gene Location: 1102322-1103224 bp Ori: AKV05805.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102517-1102775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0251 7-1 1 02775 bp Feature: domain Description: GIIM Note: maturase Location: 1102832-1103057 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 02832-1 1 03057 bp Feature: gene Location: 1103741-1105033 bp Ori: AKV05806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104002-1104617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 04002-1 1 0461 7 bp Feature: domain Description: GIIM Note: maturase Location: 1104671-1104875 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 04671 -1 1 04875 bp Feature: gene Location: 1105766-1107091 bp Ori: AKV05807.1 Feature: domain Description: OprD Location: 1105859-1107086 bp Feature: domain Description: OprD Location: 1 1 05859-1 1 07086 bp Feature: gene Location: 1107395-1107586 bp Feature: gene Location: 2806811-2807284 bp Ori: AKV07265.1 Feature: domain Description: CAP_ED Location: 2806871-2807210 bp Feature: domain Description: CAP_ED Location: 2806871 -280721 0 bp Feature: gene Location: 2807496-2809550 bp Ori: AKV07266.1 Feature: domain Description: PtrB Location: 2807517-2809539 bp Feature: domain Description: PtrB Location: 280751 7-2809539 bp Feature: gene Location: 2810766-2812463 bp Ori: AKV07267.1 Feature: domain Description: RVT_N Location: 2810823-2811066 bp Feature: domain Description: RVT_N Location: 281 0823-281 1 066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2811111-2811747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 1 1 1 1 -281 1 747 bp Feature: domain Description: GIIM Note: maturase Location: 2811798-2812032 bp Feature: domain Description: GIIM Note: maturase Location: 281 1 798-281 2032 bp Feature: domain Description: HNHc Note: nucleases Location: 2812257-2812416 bp Feature: domain Description: HNHc Note: nucleases Location: 281 2257-281 241 6 bp Feature: gene Location: 2812559-2813056 bp Feature: gene Location: 2813087-2813863 bp Ori: AKV07269.1 Feature: domain Description: GATase_4 Location: 2813090-2813855 bp Feature: domain Description: GATase_4 Location: 281 3090-281 3855 bp Feature: gene Location: 2890432-2891253 bp Feature: gene Location: 2891945-2892199 bp Feature: gene Location: 2892272-2893390 bp Ori: AKV07344.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2892410-2892977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 289241 0-2892977 bp Feature: gene Location: 2893664-2894107 bp Feature: gene Location: 3206366-3206686 bp Ori: AKV07618.1 Feature: domain Description: YbjQ_1 Location: 3206369-3206681 bp Feature: domain Description: YbjQ_1 Location: 3206369-3206681 bp Feature: gene Location: 3206866-3207054 bp Feature: gene Location: 3207545-3208837 bp Ori: AKV07619.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3207806-3208421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3207806-3208421 bp Feature: domain Description: GIIM Note: maturase Location: 3208475-3208679 bp Feature: domain Description: GIIM Note: maturase Location: 3208475-3208679 bp Feature: gene Location: 3209199-3209570 bp Ori: AKV07620.1 Feature: domain Description: Gly-zipper_Omp Location: 3209286-3209403 bp Feature: domain Description: Gly-zipper_Omp Location: 3209286-3209403 bp Feature: domain Description: Gly-zipper_Omp Location: 3209427-3209550 bp Feature: domain Description: Gly-zipper_Omp Location: 3209427-3209550 bp Feature: gene Location: 3209760-3210188 bp Ori: AKV07621.1 Feature: domain Description: Gly-zipper_Omp Location: 3209790-3209895 bp Feature: domain Description: Gly-zipper_Omp Location: 3209790-3209895 bp Feature: domain Description: Rick_17kDa_Anti Location: 3209907-3210024 bp Feature: domain Description: Rick_1 7kDa_Anti Location: 3209907-321 0024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315), DUF2790 (pfam10976), OprD (pfam03573), CAP_ED (cl00047), PtrB (COG1770), RVT_N (pfam13655)
HNHc (smart00507), GATase_4 (pfam13230), RVT-Retrons, YbjQ_1 (pfam01906), Gly-zipper_Omp (pfam13488), Rick_17kDa_Anti (pfam05433)