myRT

myRT report for GCA_000294365.1_ASM29436v1

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Seq: CP003785.1 Klebsiella pneumoniae subsp. pneumoniae 1084, complete genome (5386705 bp)
Overview 1 RT 1: 660638-666491 bp 2 RT 2: 1721017-1727487 bp 3 RT 3: 3174031-3179394 bp 4 RT 4: 3247925-3256111 bp Neighborhood of RT #1 [660638, 666493] hdeB RVT-GII PRK10201 PRK05658 Neighborhood of RT #2 [1721017, 1727501] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3174031, 3179447] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #4 [3247925, 3256155] DUF968 PRK10597 RVT-GII YncE YncE FhlA EAL Feature: gene Location: 660638-661003 bp Ori: AFQ64025.1 Feature: domain Description: hdeB Location: 660704-660971 bp Feature: domain Description: hdeB Location: 660704-660971 bp Feature: gene Location: 661072-661344 bp Feature: gene Location: 662070-663557 bp Ori: AFQ64027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662475-663165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662475-6631 65 bp Feature: gene Location: 663989-664495 bp Ori: AFQ64028.1 Feature: domain Description: PRK10201 Location: 663992-664490 bp Feature: domain Description: PRK1 0201 Location: 663992-664490 bp Feature: gene Location: 664595-666493 bp Ori: AFQ64029.1 Feature: domain Description: PRK05658 Location: 664655-666491 bp Feature: domain Description: PRK05658 Location: 664655-666491 bp Feature: gene Location: 1721017-1722441 bp Ori: AFQ64980.1 Feature: domain Description: SbcB Location: 1721023-1722439 bp Feature: domain Description: SbcB Location: 1 721 023-1 722439 bp Feature: gene Location: 1722736-1723785 bp Ori: AFQ64981.1 Feature: domain Description: dacD Location: 1722739-1723780 bp Feature: domain Description: dacD Location: 1 722739-1 723780 bp Feature: gene Location: 1724302-1725789 bp Ori: AFQ64982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1724707-1725397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 724707-1 725397 bp Feature: gene Location: 1725871-1726344 bp Ori: AFQ64983.1 Feature: domain Description: PRK10016 Location: 1725874-1726333 bp Feature: domain Description: PRK1 001 6 Location: 1 725874-1 726333 bp Feature: gene Location: 1726443-1727501 bp Ori: AFQ64984.1 Feature: domain Description: YccC Location: 1726449-1727487 bp Feature: domain Description: YccC Location: 1 726449-1 727487 bp Feature: gene Location: 3174031-3175296 bp Ori: AFQ66293.1 Feature: domain Description: umuC Location: 3174034-3175294 bp Feature: domain Description: umuC Location: 31 74034-31 75294 bp Feature: gene Location: 3175299-3175718 bp Ori: AFQ66294.1 Feature: domain Description: PRK10276 Location: 3175302-3175713 bp Feature: domain Description: PRK1 0276 Location: 31 75302-31 7571 3 bp Feature: gene Location: 3175797-3177284 bp Ori: AFQ66295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3176202-3176892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 76202-31 76892 bp Feature: gene Location: 3177898-3178140 bp Ori: AFQ66296.1 Feature: domain Description: DinI Location: 3177949-3178129 bp Feature: domain Description: DinI Location: 31 77949-31 781 29 bp Feature: gene Location: 3178311-3179447 bp Ori: AFQ66297.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3178491-3179394 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 31 78491 -31 79394 bp Feature: gene Location: 3247925-3248956 bp Ori: AFQ66359.1 Feature: domain Description: DUF968 Location: 3248318-3248945 bp Feature: domain Description: DUF968 Location: 324831 8-3248945 bp Feature: gene Location: 3249891-3250124 bp Ori: AFQ66360.1 Feature: domain Description: PRK10597 Location: 3249894-3250119 bp Feature: domain Description: PRK1 0597 Location: 3249894-32501 1 9 bp Feature: gene Location: 3250203-3251690 bp Ori: AFQ66361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3250608-3251298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3250608-3251 298 bp Feature: gene Location: 3252643-3254172 bp Ori: AFQ66362.1 Feature: domain Description: YncE Location: 3252697-3253504 bp Feature: domain Description: YncE Location: 3252697-3253504 bp Feature: domain Description: YncE Location: 3253573-3254014 bp Feature: domain Description: YncE Location: 3253573-325401 4 bp Feature: gene Location: 3254392-3256155 bp Ori: AFQ66363.1 Feature: domain Description: FhlA Location: 3254461-3254854 bp Feature: domain Description: FhlA Location: 3254461 -3254854 bp Feature: domain Description: EAL Location: 3255397-3256111 bp Feature: domain Description: EAL Location: 3255397-32561 1 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hdeB (PRK11566), RVT-GII, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), DUF968 (pfam06147), PRK10597 (DNA damage-inducible protein I; Provisional), YncE (COG3391), FhlA (COG3604), EAL (smart00052)