myRT

myRT report for GCA_000294775.2_ASM29477v2

Download annotations/find similar RTs

Seq: CP015506.1 Bacillus oceanisediminis 2691 chromosome, complete genome (5461741 bp)
Overview 1 RT 1: 2262669-2269481 bp 2 RT 2: 4102473-4107813 bp Neighborhood of RT #1 [2262669, 2269495] trehalose_treC PP2C_2 RVT-GII GIIM PRK09776 GGDEF RimL Neighborhood of RT #2 [4102473, 4107813] UbiE RVT-GII GIIM Feature: gene Location: 2262669-2264354 bp Ori: AND39753.1 Feature: domain Description: trehalose_treC Location: 2262684-2264343 bp Feature: domain Description: trehalose_treC Location: 2262684-2264343 bp Feature: gene Location: 2264568-2265368 bp Ori: AND39754.1 Feature: domain Description: PP2C_2 Location: 2264673-2265264 bp Feature: domain Description: PP2C_2 Location: 2264673-2265264 bp Feature: gene Location: 2266201-2267529 bp Ori: AND39755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2266456-2267149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2266456-22671 49 bp Feature: domain Description: GIIM Note: maturase Location: 2267233-2267443 bp Feature: domain Description: GIIM Note: maturase Location: 2267233-2267443 bp Feature: gene Location: 2267809-2268693 bp Ori: AND39756.1 Feature: domain Description: PRK09776 Location: 2267833-2268202 bp Feature: domain Description: PRK09776 Location: 2267833-2268202 bp Feature: domain Description: GGDEF Location: 2268205-2268676 bp Feature: domain Description: GGDEF Location: 2268205-2268676 bp Feature: gene Location: 2268950-2269495 bp Ori: AND39757.1 Feature: domain Description: RimL Location: 2268959-2269481 bp Feature: domain Description: RimL Location: 2268959-2269481 bp Feature: gene Location: 4102473-4103234 bp Ori: AND41469.1 Feature: domain Description: UbiE Location: 4102488-4102944 bp Feature: domain Description: UbiE Location: 41 02488-41 02944 bp Feature: gene Location: 4103904-4104554 bp Feature: gene Location: 4104762-4106090 bp Ori: AND41471.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4105017-4105710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 0501 7-41 0571 0 bp Feature: domain Description: GIIM Note: maturase Location: 4105794-4106004 bp Feature: domain Description: GIIM Note: maturase Location: 41 05794-41 06004 bp Feature: gene Location: 4106701-4107147 bp Feature: gene Location: 4107244-4107813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trehalose_treC (TIGR02403), PP2C_2 (pfam13672), RVT-GII, GIIM (pfam08388), PRK09776 (putative diguanylate cyclase; Provisional), GGDEF (TIGR00254), RimL (COG1670), UbiE (COG2226)

Seq: CP015507.1 Bacillus oceanisediminis strain 2691 plasmid pBO1, complete sequence (386866 bp)
Overview 1 RT 1: 206-3200 bp 2 RT 2: 248959-254236 bp 3 RT 3: 256901-262136 bp 4 RT 4: 313464-317722 bp 5 RT 5: 328268-340331 bp Neighborhood of RT #1 [206, 3200] RVT-GII GIIM spore_II_D Neighborhood of RT #2 [248959, 254236] PrgI RVT-GII HNHc Neighborhood of RT #3 [256901, 262174] PHA02517 DUF3854 RVT-GII HNHc DUF4258 Neighborhood of RT #4 [313464, 317722] RVT-GII HNHc Neighborhood of RT #5 [328268, 340331] DEXHc_Snf DEXHc_Snf RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 206-1534 bp Ori: AND42867.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1154 bp Feature: domain Description: GIIM Note: maturase Location: 1238-1448 bp Feature: domain Description: GIIM Note: maturase Location: 12 38-1448 bp Feature: gene Location: 1744-2793 bp Ori: AND42868.1 Feature: domain Description: spore_II_D Location: 1759-2746 bp Feature: domain Description: spore_II_D Location: 1759-2 746 bp Feature: gene Location: 2937-3200 bp Feature: gene Location: 248959-249879 bp Feature: gene Location: 249876-250220 bp Ori: AND43095.1 Feature: domain Description: PrgI Location: 249894-250155 bp Feature: domain Description: PrgI Location: 2 49894-2 50155 bp Feature: gene Location: 250526-252307 bp Ori: AND43232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250784-251486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 50784-2 51486 bp Feature: domain Description: HNHc Note: nucleases Location: 252041-252170 bp Feature: domain Description: HNHc Note: nucleases Location: 2 52 041-2 52 170 bp Feature: gene Location: 253034-253417 bp Feature: gene Location: 253637-254236 bp Feature: gene Location: 256901-257752 bp Ori: AND43104.1 Feature: domain Description: PHA02517 Location: 256940-257726 bp Feature: domain Description: PHA02 517 Location: 2 56940-2 5772 6 bp Feature: gene Location: 257833-258354 bp Ori: AND43105.1 Feature: domain Description: DUF3854 Location: 258163-258325 bp Feature: domain Description: DUF3854 Location: 2 58163-2 5832 5 bp Feature: gene Location: 258517-260298 bp Ori: AND43233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258775-259477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58775-2 59477 bp Feature: domain Description: HNHc Note: nucleases Location: 260032-260161 bp Feature: domain Description: HNHc Note: nucleases Location: 2 60032 -2 60161 bp Feature: gene Location: 261032-261757 bp Feature: gene Location: 261881-262174 bp Ori: AND43107.1 Feature: domain Description: DUF4258 Location: 261944-262136 bp Feature: domain Description: DUF42 58 Location: 2 61944-2 62 136 bp Feature: gene Location: 313464-313793 bp Feature: gene Location: 313774-314070 bp Feature: gene Location: 314752-316558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315046-315745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315046-315745 bp Feature: domain Description: HNHc Note: nucleases Location: 316303-316441 bp Feature: domain Description: HNHc Note: nucleases Location: 316303-316441 bp Feature: gene Location: 316703-317452 bp Feature: gene Location: 317522-317722 bp Feature: gene Location: 328268-328465 bp Feature: gene Location: 328541-330343 bp Feature: domain Description: DEXHc_Snf Location: 329375-329759 bp Feature: domain Description: DEXHc_Snf Location: 32 9375-32 9759 bp Feature: domain Description: DEXHc_Snf Location: 330179-330314 bp Feature: domain Description: DEXHc_Snf Location: 330179-330314 bp Feature: gene Location: 330946-332778 bp Ori: AND43168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331213-332044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3312 13-332 044 bp Feature: domain Description: Intron_maturas2 Location: 332116-332491 bp Feature: domain Description: Intron_maturas2 Location: 332 116-332 491 bp Feature: domain Description: HNHc Note: nucleases Location: 332584-332728 bp Feature: domain Description: HNHc Note: nucleases Location: 332 584-332 72 8 bp Feature: gene Location: 332943-333692 bp Feature: gene Location: 334391-336190 bp Ori: AND43170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334685-335378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334685-335378 bp Feature: domain Description: HNHc Note: nucleases Location: 335936-336074 bp Feature: domain Description: HNHc Note: nucleases Location: 335936-336074 bp Feature: gene Location: 337025-338830 bp Ori: AND43171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337289-338117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3372 89-338117 bp Feature: domain Description: Intron_maturas2 Location: 338174-338465 bp Feature: domain Description: Intron_maturas2 Location: 338174-338465 bp Feature: domain Description: HNHc Note: nucleases Location: 338648-338798 bp Feature: domain Description: HNHc Note: nucleases Location: 338648-338798 bp Feature: gene Location: 338970-339554 bp Feature: gene Location: 339567-340331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), spore_II_D (TIGR02870), PrgI (pfam12666), HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed), DUF3854 (pfam12965), DUF4258 (pfam14076), DEXHc_Snf (cd17919), Intron_maturas2 (pfam01348)