myRT

myRT report for GCA_000299255.1_ASM29925v1

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Seq: CP003297.1 Escherichia coli O104:H4 str. 2009EL-2050, complete genome (5253138 bp)
Overview 1 RT 1: 923499-931820 bp 2 RT 2: 4533226-4539323 bp 3 RT 3: 4732591-4740217 bp 4 RT 4: 4752906-4760671 bp Neighborhood of RT #1 [923499, 931831] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [4533226, 4539385] fecE COG2085 RVT-GII GIIM InsE CE4_Ecf1_like_5s CE4_Ecf1_like_5s Neighborhood of RT #3 [4732591, 4740291] TnpB_IS66 InsE RVT-GII GIIM TonB-siderophor IucD Neighborhood of RT #4 [4752906, 4760673] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM YkfC InsE Feature: gene Location: 923499-927281 bp Ori: AFS55628.1 Feature: domain Description: Peptidase_S6 Location: 923652-925824 bp Feature: domain Description: Peptidase_S6 Location: 923652-925824 bp Feature: domain Description: autotrans_barl Location: 926388-927234 bp Feature: domain Description: autotrans_barl Location: 926388-927234 bp Feature: gene Location: 927446-927817 bp Ori: AFS55629.1 Feature: domain Description: PHA02517 Location: 927449-927815 bp Feature: domain Description: PHA0251 7 Location: 927449-92781 5 bp Feature: gene Location: 928009-929532 bp Ori: AFS55630.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928282-929014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928282-92901 4 bp Feature: domain Description: GIIM Note: maturase Location: 929089-929287 bp Feature: domain Description: GIIM Note: maturase Location: 929089-929287 bp Feature: gene Location: 930124-930363 bp Ori: AFS55631.1 Feature: domain Description: PHA02517 Location: 930127-930298 bp Feature: domain Description: PHA0251 7 Location: 9301 27-930298 bp Feature: gene Location: 930680-931831 bp Ori: AFS55632.1 Feature: domain Description: HTH_38 Location: 930689-930803 bp Feature: domain Description: HTH_38 Location: 930689-930803 bp Feature: domain Description: Tra8 Location: 930839-931820 bp Feature: domain Description: Tra8 Location: 930839-931 820 bp Feature: gene Location: 4533226-4533993 bp Ori: AFS59047.1 Gene: fecE Feature: domain Description: fecE Location: 4533229-4533991 bp Feature: domain Description: fecE Location: 4533229-4533991 bp Feature: gene Location: 4534551-4534964 bp Ori: AFS59048.1 Feature: domain Description: COG2085 Location: 4534650-4534797 bp Feature: domain Description: COG2085 Location: 4534650-4534797 bp Feature: gene Location: 4535459-4536982 bp Ori: AFS59049.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4535732-4536464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4535732-4536464 bp Feature: domain Description: GIIM Note: maturase Location: 4536539-4536737 bp Feature: domain Description: GIIM Note: maturase Location: 4536539-4536737 bp Feature: gene Location: 4538055-4538357 bp Ori: AFS59050.1 Feature: domain Description: InsE Location: 4538094-4538343 bp Feature: domain Description: InsE Location: 4538094-4538343 bp Feature: gene Location: 4538564-4539385 bp Ori: AFS59051.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 4538642-4539038 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 4538642-4539038 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4539044-4539323 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 4539044-4539323 bp Feature: gene Location: 4732591-4732842 bp Ori: AFS59241.1 Feature: domain Description: TnpB_IS66 Location: 4732618-4732813 bp Feature: domain Description: TnpB_IS66 Location: 473261 8-473281 3 bp Feature: gene Location: 4732868-4733194 bp Ori: AFS59242.1 Feature: domain Description: InsE Location: 4732871-4733192 bp Feature: domain Description: InsE Location: 4732871 -47331 92 bp Feature: gene Location: 4734265-4735788 bp Ori: AFS59243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4734538-4735270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4734538-4735270 bp Feature: domain Description: GIIM Note: maturase Location: 4735345-4735543 bp Feature: domain Description: GIIM Note: maturase Location: 4735345-4735543 bp Feature: gene Location: 4736753-4738948 bp Ori: AFS59244.1 Feature: domain Description: TonB-siderophor Location: 4736885-4738946 bp Feature: domain Description: TonB-siderophor Location: 4736885-4738946 bp Feature: gene Location: 4738954-4740291 bp Ori: AFS59245.1 Feature: domain Description: IucD Location: 4738957-4740217 bp Feature: domain Description: IucD Location: 4738957-474021 7 bp Feature: gene Location: 4752906-4757024 bp Ori: AFS59259.1 Feature: domain Description: Peptidase_S6 Location: 4753059-4755231 bp Feature: domain Description: Peptidase_S6 Location: 4753059-4755231 bp Feature: domain Description: autotrans_barl Location: 4755795-4757022 bp Feature: domain Description: autotrans_barl Location: 4755795-4757022 bp Feature: gene Location: 4757189-4757560 bp Ori: AFS59260.1 Feature: domain Description: PHA02517 Location: 4757192-4757558 bp Feature: domain Description: PHA0251 7 Location: 47571 92-4757558 bp Feature: gene Location: 4757752-4758933 bp Ori: AFS59261.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4757758-4758415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4757758-475841 5 bp Feature: domain Description: GIIM Note: maturase Location: 4758490-4758688 bp Feature: domain Description: GIIM Note: maturase Location: 4758490-4758688 bp Feature: gene Location: 4759052-4759276 bp Ori: AFS59262.1 Feature: domain Description: YkfC Location: 4759061-4759265 bp Feature: domain Description: YkfC Location: 4759061 -4759265 bp Feature: gene Location: 4760347-4760673 bp Ori: AFS59263.1 Feature: domain Description: InsE Location: 4760350-4760671 bp Feature: domain Description: InsE Location: 4760350-4760671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), fecE (PRK11231), COG2085 (Predicted dinucleotide-binding enzyme ), InsE (COG2963)
CE4_Ecf1_like_5s (cd10969), TnpB_IS66 (pfam05717), TonB-siderophor (TIGR01783), IucD (COG3486), YkfC (COG3344)

Seq: CP003299.1 Escherichia coli O104:H4 str. 2009EL-2050 plasmid pAA-09EL50, complete sequence (74213 bp)
Overview 1 RT 1: 22848-27892 bp Neighborhood of RT #1 [22848, 27906] PHA02517 PHA02517 RVT-GII GIIM IS5 Feature: gene Location: 22848-23237 bp Ori: AFS59854.1 Feature: domain Description: PHA02517 Location: 22911-23160 bp Feature: domain Description: PHA02 517 Location: 2 2 911-2 3160 bp Feature: gene Location: 23140-23307 bp Ori: AFS59855.1 Feature: domain Description: PHA02517 Location: 23158-23266 bp Feature: domain Description: PHA02 517 Location: 2 3158-2 32 66 bp Feature: gene Location: 23929-25452 bp Ori: AFS59856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24202-24934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 02 -2 4934 bp Feature: domain Description: GIIM Note: maturase Location: 25009-25207 bp Feature: domain Description: GIIM Note: maturase Location: 2 5009-2 52 07 bp Feature: gene Location: 26793-26927 bp Feature: gene Location: 26926-27906 bp Ori: AFS59858.1 Feature: domain Description: IS5 Location: 27115-27892 bp Feature: domain Description: IS5 Location: 2 7115-2 7892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), IS5 (COG3039)