myRT

myRT report for GCA_000299335.2_ASM29933v2

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Seq: CP004387.1 Alcanivorax pacificus W11-5, complete genome (4168427 bp)
Overview 1 RT 1: 707822-712671 bp 2 RT 2: 1902000-1908741 bp 3 RT 3: 3676102-3684239 bp 4 RT 4: 3735468-3738983 bp Neighborhood of RT #1 [707822, 713060] Phage_int_SAM_4 UPF0547 RVT-GII rve_3 RAYT RAYT Neighborhood of RT #2 [1902000, 1908764] KOG3180 KOG3954 RVT-UG7 Gamma_PGA_hydro LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #3 [3676102, 3684256] NERD UvrD UvrD UvrD RAYT RAYT RVT-GII HNH_5 DUF932 Neighborhood of RT #4 [3735468, 3738985] HTH_Tnp_1 Tra5 RVT-Retrons GepA COG1669 Feature: gene Location: 707822-708163 bp Ori: AJD47087.1 Feature: domain Description: Phage_int_SAM_4 Location: 707864-708071 bp Feature: domain Description: Phage_int_SAM_4 Location: 707864-708071 bp Feature: gene Location: 710078-710410 bp Ori: AJD47088.1 Feature: domain Description: UPF0547 Location: 710096-710153 bp Feature: domain Description: UPF0547 Location: 71 0096-71 01 53 bp Feature: gene Location: 710996-711664 bp Ori: AJD47089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711026-711299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 1 026-71 1 299 bp Feature: gene Location: 711687-711965 bp Ori: AJD47090.1 Feature: domain Description: rve_3 Location: 711708-711891 bp Feature: domain Description: rve_3 Location: 71 1 708-71 1 891 bp Feature: gene Location: 712068-713060 bp Ori: AJD47091.1 Feature: domain Description: RAYT Location: 712116-712314 bp Feature: domain Description: RAYT Location: 71 21 1 6-71 231 4 bp Feature: domain Description: RAYT Location: 712482-712671 bp Feature: domain Description: RAYT Location: 71 2482-71 2671 bp Feature: gene Location: 1902000-1902749 bp Ori: AJD48124.1 Feature: domain Description: KOG3180 Location: 1902003-1902744 bp Feature: domain Description: KOG31 80 Location: 1 902003-1 902744 bp Feature: gene Location: 1902749-1903678 bp Ori: AJD48125.1 Feature: domain Description: KOG3954 Location: 1902755-1903676 bp Feature: domain Description: KOG3954 Location: 1 902755-1 903676 bp Feature: gene Location: 1904394-1905923 bp Ori: AJD48126.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1904757-1905153 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 904757-1 9051 53 bp Feature: gene Location: 1906002-1906577 bp Ori: AJD48127.1 Feature: domain Description: Gamma_PGA_hydro Location: 1906017-1906542 bp Feature: domain Description: Gamma_PGA_hydro Location: 1 90601 7-1 906542 bp Feature: gene Location: 1907184-1908764 bp Ori: AJD48128.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1907352-1907571 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 907352-1 907571 bp Feature: domain Description: zf-IS66 Location: 1907601-1907724 bp Feature: domain Description: zf-IS66 Location: 1 907601 -1 907724 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1907766-1908609 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 907766-1 908609 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1908630-1908741 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 908630-1 908741 bp Feature: gene Location: 3676102-3677952 bp Ori: AJD49693.1 Feature: domain Description: NERD Location: 3676150-3676444 bp Feature: domain Description: NERD Location: 36761 50-3676444 bp Feature: domain Description: UvrD Location: 3676834-3677098 bp Feature: domain Description: UvrD Location: 3676834-3677098 bp Feature: domain Description: UvrD Location: 3677179-3677686 bp Feature: domain Description: UvrD Location: 36771 79-3677686 bp Feature: domain Description: UvrD Location: 3677707-3677908 bp Feature: domain Description: UvrD Location: 3677707-3677908 bp Feature: gene Location: 3678706-3679704 bp Ori: AJD49694.1 Feature: domain Description: RAYT Location: 3678775-3678952 bp Feature: domain Description: RAYT Location: 3678775-3678952 bp Feature: domain Description: RAYT Location: 3679117-3679309 bp Feature: domain Description: RAYT Location: 36791 1 7-3679309 bp Feature: gene Location: 3680260-3681663 bp Ori: AJD49695.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680608-3681298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680608-3681 298 bp Feature: gene Location: 3682173-3683357 bp Ori: AJD49696.1 Feature: domain Description: HNH_5 Location: 3682194-3682359 bp Feature: domain Description: HNH_5 Location: 36821 94-3682359 bp Feature: gene Location: 3683945-3684256 bp Ori: AJD49697.1 Feature: domain Description: DUF932 Location: 3684053-3684239 bp Feature: domain Description: DUF932 Location: 3684053-3684239 bp Feature: gene Location: 3735468-3735734 bp Ori: AJD49744.1 Feature: domain Description: HTH_Tnp_1 Location: 3735474-3735681 bp Feature: domain Description: HTH_Tnp_1 Location: 3735474-3735681 bp Feature: gene Location: 3735869-3736579 bp Ori: AJD49745.1 Feature: domain Description: Tra5 Location: 3735890-3736544 bp Feature: domain Description: Tra5 Location: 3735890-3736544 bp Feature: gene Location: 3736631-3737161 bp Ori: AJD49746.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3736637-3736898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3736637-3736898 bp Feature: gene Location: 3737870-3738316 bp Ori: AJD49747.1 Feature: domain Description: GepA Location: 3737873-3738284 bp Feature: domain Description: GepA Location: 3737873-3738284 bp Feature: gene Location: 3738695-3738985 bp Ori: AJD49748.1 Feature: domain Description: COG1669 Location: 3738713-3738983 bp Feature: domain Description: COG1 669 Location: 373871 3-3738983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), UPF0547 (pfam10571), RVT-GII, rve_3 (pfam13683), RAYT (COG1943), KOG3180 (KOG3180, Electron transfer flavoprotein, beta subunit ), KOG3954 (KOG3954, Electron transfer flavoprotein, alpha subunit ), RVT-UG7, Gamma_PGA_hydro (pfam05908), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), NERD (pfam08378), UvrD (COG0210), HNH_5 (pfam14279), DUF932 (pfam06067), HTH_Tnp_1 (pfam01527), Tra5 (COG2801), RVT-Retrons
GepA (COG3600), COG1669 (Predicted nucleotidyltransferase )