myRT

myRT report for GCA_000299455.1_ASM29945v1

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Seq: CP003291.1 Escherichia coli O104:H4 str. 2011C-3493 plasmid pAA-EA11, complete sequence (74217 bp)
Overview 1 RT 1: 757-7639 bp Neighborhood of RT #1 [757, 7662] IS5 RVT-GII GIIM InsE HTH_ARAC Feature: gene Location: 757-1737 bp Ori: AFS77005.1 Feature: domain Description: IS5 Location: 946-1723 bp Feature: domain Description: IS5 Location: 946-1 723 bp Feature: gene Location: 1736-1870 bp Feature: gene Location: 3211-4734 bp Ori: AFS77007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3484-4216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3484-421 6 bp Feature: domain Description: GIIM Note: maturase Location: 4291-4489 bp Feature: domain Description: GIIM Note: maturase Location: 4291 -4489 bp Feature: gene Location: 5805-6131 bp Ori: AFS77008.1 Feature: domain Description: InsE Location: 5808-6129 bp Feature: domain Description: InsE Location: 5808-61 29 bp Feature: gene Location: 6865-7662 bp Ori: AFS77009.1 Feature: domain Description: HTH_ARAC Location: 7396-7639 bp Feature: domain Description: HTH_ARAC Location: 7396-7639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_ARAC (smart00342)

Seq: CP003289.1 Escherichia coli O104:H4 str. 2011C-3493, complete genome (5273097 bp)
Overview 1 RT 1: 4555516-4561613 bp 2 RT 2: 4752484-4760109 bp 3 RT 3: 4772682-4781443 bp Neighborhood of RT #1 [4555516, 4561675] fecE COG2085 RVT-GII GIIM InsE CE4_Ecf1_like_5s CE4_Ecf1_like_5s Neighborhood of RT #2 [4752484, 4760183] TnpB_IS66 InsE RVT-GII GIIM TonB-siderophor IucD Neighborhood of RT #3 [4772682, 4781445] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM InsE Antirestrict Feature: gene Location: 4555516-4556283 bp Ori: AFS76269.1 Gene: fecE Feature: domain Description: fecE Location: 4555519-4556281 bp Feature: domain Description: fecE Location: 4555519-45562 81 bp Feature: gene Location: 4556841-4557254 bp Ori: AFS76270.1 Feature: domain Description: COG2085 Location: 4556940-4557087 bp Feature: domain Description: COG2 085 Location: 4556940-4557087 bp Feature: gene Location: 4557749-4559272 bp Ori: AFS76271.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4558022-4558754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455802 2 -4558754 bp Feature: domain Description: GIIM Note: maturase Location: 4558829-4559027 bp Feature: domain Description: GIIM Note: maturase Location: 455882 9-455902 7 bp Feature: gene Location: 4560345-4560647 bp Ori: AFS76272.1 Feature: domain Description: InsE Location: 4560384-4560633 bp Feature: domain Description: InsE Location: 4560384-4560633 bp Feature: gene Location: 4560854-4561675 bp Ori: AFS76273.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 4560932-4561328 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4560932 -456132 8 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4561334-4561613 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4561334-4561613 bp Feature: gene Location: 4752484-4752735 bp Ori: AFS76459.1 Feature: domain Description: TnpB_IS66 Location: 4752511-4752706 bp Feature: domain Description: TnpB_IS66 Location: 4752 511-4752 706 bp Feature: gene Location: 4752761-4753087 bp Ori: AFS76460.1 Feature: domain Description: InsE Location: 4752764-4753085 bp Feature: domain Description: InsE Location: 4752 764-4753085 bp Feature: gene Location: 4754157-4755680 bp Ori: AFS76461.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4754430-4755162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4754430-4755162 bp Feature: domain Description: GIIM Note: maturase Location: 4755237-4755435 bp Feature: domain Description: GIIM Note: maturase Location: 47552 37-4755435 bp Feature: gene Location: 4756645-4758840 bp Ori: AFS76462.1 Feature: domain Description: TonB-siderophor Location: 4756777-4758838 bp Feature: domain Description: TonB-siderophor Location: 4756777-4758838 bp Feature: gene Location: 4758846-4760183 bp Ori: AFS76463.1 Feature: domain Description: IucD Location: 4758849-4760109 bp Feature: domain Description: IucD Location: 4758849-4760109 bp Feature: gene Location: 4772682-4776800 bp Ori: AFS76476.1 Feature: domain Description: Peptidase_S6 Location: 4772835-4775007 bp Feature: domain Description: Peptidase_S6 Location: 4772 835-4775007 bp Feature: domain Description: autotrans_barl Location: 4775571-4776798 bp Feature: domain Description: autotrans_barl Location: 4775571-4776798 bp Feature: gene Location: 4776965-4777351 bp Ori: AFS76477.1 Feature: domain Description: PHA02517 Location: 4776968-4777349 bp Feature: domain Description: PHA02 517 Location: 4776968-4777349 bp Feature: gene Location: 4777528-4779051 bp Ori: AFS76478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4777801-4778533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4777801-4778533 bp Feature: domain Description: GIIM Note: maturase Location: 4778608-4778806 bp Feature: domain Description: GIIM Note: maturase Location: 4778608-4778806 bp Feature: gene Location: 4780122-4780448 bp Ori: AFS76479.1 Feature: domain Description: InsE Location: 4780125-4780446 bp Feature: domain Description: InsE Location: 478012 5-4780446 bp Feature: gene Location: 4780972-4781445 bp Ori: AFS76480.1 Feature: domain Description: Antirestrict Location: 4781158-4781443 bp Feature: domain Description: Antirestrict Location: 4781158-4781443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecE (PRK11231), COG2085 (Predicted dinucleotide-binding enzyme ), RVT-GII, GIIM (pfam08388), InsE (COG2963), CE4_Ecf1_like_5s (cd10969), TnpB_IS66 (pfam05717), TonB-siderophor (TIGR01783), IucD (COG3486), Peptidase_S6 (pfam02395)
autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), Antirestrict (pfam03230)