myRT

myRT report for GCA_000299475.1_ASM29947v1

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Seq: CP003302.1 Escherichia coli O104:H4 str. 2009EL-2071 plasmid pAA-09EL71, complete sequence (75573 bp)
Overview 1 RT 1: 47220-50775 bp Neighborhood of RT #1 [47220, 51020] IS5 RVT-GII GIIM Feature: gene Location: 47220-48200 bp Ori: AFS88884.1 Feature: domain Description: IS5 Location: 47409-48186 bp Feature: domain Description: IS5 Location: 47409-481 86 bp Feature: gene Location: 48199-48333 bp Feature: gene Location: 49674-51020 bp Ori: AFS88886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49770-50502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49770-50502 bp Feature: domain Description: GIIM Note: maturase Location: 50577-50775 bp Feature: domain Description: GIIM Note: maturase Location: 50577-50775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: CP003301.1 Escherichia coli O104:H4 str. 2009EL-2071, complete genome (5312586 bp)
Overview 1 RT 1: 912824-921481 bp 2 RT 2: 4592197-4597314 bp 3 RT 3: 4791560-4799186 bp 4 RT 4: 4812432-4821193 bp Neighborhood of RT #1 [912824, 921492] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [4592197, 4597328] fecE COG2085 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4791560, 4799260] TnpB_IS66 InsE RVT-GII GIIM TonB-siderophor IucD Neighborhood of RT #4 [4812432, 4821195] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM InsE Antirestrict Feature: gene Location: 912824-916942 bp Ori: AFS87945.1 Feature: domain Description: Peptidase_S6 Location: 912977-915149 bp Feature: domain Description: Peptidase_S6 Location: 912 977-915149 bp Feature: domain Description: autotrans_barl Location: 915713-916940 bp Feature: domain Description: autotrans_barl Location: 915713-916940 bp Feature: gene Location: 917107-917493 bp Ori: AFS87944.1 Feature: domain Description: PHA02517 Location: 917110-917491 bp Feature: domain Description: PHA02 517 Location: 917110-917491 bp Feature: gene Location: 917670-919193 bp Ori: AFS87943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917943-918675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917943-918675 bp Feature: domain Description: GIIM Note: maturase Location: 918750-918948 bp Feature: domain Description: GIIM Note: maturase Location: 918750-918948 bp Feature: gene Location: 919767-920024 bp Ori: AFS87942.1 Feature: domain Description: PHA02517 Location: 919770-919941 bp Feature: domain Description: PHA02 517 Location: 919770-919941 bp Feature: gene Location: 920341-921492 bp Ori: AFS87941.1 Feature: domain Description: HTH_38 Location: 920350-920464 bp Feature: domain Description: HTH_38 Location: 92 0350-92 0464 bp Feature: domain Description: Tra8 Location: 920500-921481 bp Feature: domain Description: Tra8 Location: 92 0500-92 1481 bp Feature: gene Location: 4592197-4592964 bp Ori: AFS84444.1 Gene: fecE Feature: domain Description: fecE Location: 4592200-4592962 bp Feature: domain Description: fecE Location: 4592 2 00-4592 962 bp Feature: gene Location: 4593522-4593935 bp Ori: AFS84443.1 Feature: domain Description: COG2085 Location: 4593621-4593768 bp Feature: domain Description: COG2 085 Location: 459362 1-4593768 bp Feature: gene Location: 4594430-4595953 bp Ori: AFS84442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4594703-4595435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4594703-4595435 bp Feature: domain Description: GIIM Note: maturase Location: 4595510-4595708 bp Feature: domain Description: GIIM Note: maturase Location: 4595510-4595708 bp Feature: gene Location: 4596545-4596970 bp Ori: AFS84441.1 Feature: domain Description: PHA02517 Location: 4596569-4596905 bp Feature: domain Description: PHA02 517 Location: 4596569-4596905 bp Feature: gene Location: 4597026-4597328 bp Ori: AFS84440.1 Feature: domain Description: InsE Location: 4597065-4597314 bp Feature: domain Description: InsE Location: 4597065-4597314 bp Feature: gene Location: 4791560-4791811 bp Ori: AFS84250.1 Feature: domain Description: TnpB_IS66 Location: 4791587-4791782 bp Feature: domain Description: TnpB_IS66 Location: 4791587-4791782 bp Feature: gene Location: 4791837-4792163 bp Ori: AFS84249.1 Feature: domain Description: InsE Location: 4791840-4792161 bp Feature: domain Description: InsE Location: 4791840-4792 161 bp Feature: gene Location: 4793234-4794757 bp Ori: AFS84248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4793507-4794239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4793507-47942 39 bp Feature: domain Description: GIIM Note: maturase Location: 4794314-4794512 bp Feature: domain Description: GIIM Note: maturase Location: 4794314-4794512 bp Feature: gene Location: 4795722-4797917 bp Ori: AFS84247.1 Feature: domain Description: TonB-siderophor Location: 4795854-4797915 bp Feature: domain Description: TonB-siderophor Location: 4795854-4797915 bp Feature: gene Location: 4797923-4799260 bp Ori: AFS84246.1 Feature: domain Description: IucD Location: 4797926-4799186 bp Feature: domain Description: IucD Location: 479792 6-4799186 bp Feature: gene Location: 4812432-4816550 bp Ori: AFS84233.1 Feature: domain Description: Peptidase_S6 Location: 4812585-4814757 bp Feature: domain Description: Peptidase_S6 Location: 4812 585-4814757 bp Feature: domain Description: autotrans_barl Location: 4815321-4816548 bp Feature: domain Description: autotrans_barl Location: 481532 1-4816548 bp Feature: gene Location: 4816715-4817101 bp Ori: AFS84232.1 Feature: domain Description: PHA02517 Location: 4816718-4817099 bp Feature: domain Description: PHA02 517 Location: 4816718-4817099 bp Feature: gene Location: 4817278-4818801 bp Ori: AFS84231.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4817551-4818283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4817551-48182 83 bp Feature: domain Description: GIIM Note: maturase Location: 4818358-4818556 bp Feature: domain Description: GIIM Note: maturase Location: 4818358-4818556 bp Feature: gene Location: 4819872-4820198 bp Ori: AFS84230.1 Feature: domain Description: InsE Location: 4819875-4820196 bp Feature: domain Description: InsE Location: 4819875-482 0196 bp Feature: gene Location: 4820722-4821195 bp Ori: AFS84229.1 Feature: domain Description: Antirestrict Location: 4820908-4821193 bp Feature: domain Description: Antirestrict Location: 482 0908-482 1193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), fecE (PRK11231), COG2085 (Predicted dinucleotide-binding enzyme ), InsE (COG2963)
TnpB_IS66 (pfam05717), TonB-siderophor (TIGR01783), IucD (COG3486), Antirestrict (pfam03230)