myRT

myRT report for GCA_000304415.1_RM41

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Seq: HE995406.1 Sinorhizobium meliloti Rm41 plasmid pRM41A complete sequence (246023 bp)
Overview 1 RT 1: 9070-18187 bp Neighborhood of RT #1 [9070, 18225] COG4584 HATPase_c_3 RVT-UG5 SH3_3 YegI Feature: gene Location: 9070-10620 bp Feature: domain Description: COG4584 Location: 9163-10012 bp Feature: domain Description: COG4584 Location: 91 63-1 001 2 bp Feature: gene Location: 10763-12214 bp Feature: domain Description: HATPase_c_3 Location: 10838-11162 bp Feature: domain Description: HATPase_c_3 Location: 1 0838-1 1 1 62 bp Feature: gene Location: 12542-15559 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13037-13508 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 3037-1 3508 bp Feature: gene Location: 15643-16305 bp Feature: domain Description: SH3_3 Location: 16135-16288 bp Feature: domain Description: SH3_3 Location: 1 61 35-1 6288 bp Feature: gene Location: 16309-18225 bp Feature: domain Description: YegI Location: 16330-18187 bp Feature: domain Description: YegI Location: 1 6330-1 81 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), HATPase_c_3 (pfam13589), RVT-UG5, SH3_3 (pfam08239), YegI (COG4248)

Seq: HE995407.1 Sinorhizobium meliloti Rm41 plasmid pSYMA complete sequence (1559666 bp)
Overview 1 RT 1: 895167-901308 bp Neighborhood of RT #1 [895167, 901415] PRK13347 RVT-GII GIIM NorD MoxR Feature: gene Location: 895167-895442 bp Feature: gene Location: 895441-896793 bp Feature: domain Description: PRK13347 Location: 895459-896788 bp Feature: domain Description: PRK13347 Location: 895459-896788 bp Feature: gene Location: 897110-898264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897440-898055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897440-898055 bp Feature: domain Description: GIIM Note: maturase Location: 898109-898259 bp Feature: domain Description: GIIM Note: maturase Location: 898109-8982 59 bp Feature: gene Location: 898697-900592 bp Feature: domain Description: NorD Location: 898700-900587 bp Feature: domain Description: NorD Location: 898700-900587 bp Feature: gene Location: 900597-901415 bp Feature: domain Description: MoxR Location: 900639-901308 bp Feature: domain Description: MoxR Location: 900639-901308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13347 (coproporphyrinogen III oxidase; Provisional), RVT-GII, GIIM (pfam08388), NorD (COG4548), MoxR (COG0714)

Seq: HE995408.1 Sinorhizobium meliloti Rm41 plasmid pSYMB complete sequence (1664896 bp)
Overview 1 RT 1: 332435-336482 bp 2 RT 2: 804591-810574 bp 3 RT 3: 1114321-1119617 bp 4 RT 4: 1124499-1130579 bp Neighborhood of RT #1 [332435, 336496] RVT-GII GIIM MazF fabG Neighborhood of RT #2 [804591, 810585] AraJ RVT-GII GIIM PRK09356 hutH Neighborhood of RT #3 [1114321, 1119617] DDE_Tnp_IS66 Beta_helix RVT-GII Transposase_mut Neighborhood of RT #4 [1124499, 1130579] Glf DDE_3 RVT-GII GIIM COG3415 Feature: gene Location: 332435-332791 bp Feature: gene Location: 333088-333327 bp Feature: gene Location: 333614-334888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333854-334469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 854-3 3 4469 bp Feature: domain Description: GIIM Note: maturase Location: 334523-334739 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 4523 -3 3 473 9 bp Feature: gene Location: 335192-335395 bp Feature: domain Description: MazF Location: 335195-335306 bp Feature: domain Description: MazF Location: 3 3 5195-3 3 53 06 bp Feature: gene Location: 335714-336496 bp Feature: domain Description: fabG Location: 335726-336482 bp Feature: domain Description: fabG Location: 3 3 5726-3 3 6482 bp Feature: gene Location: 804591-805775 bp Feature: domain Description: AraJ Location: 804594-805752 bp Feature: domain Description: AraJ Location: 804594-805752 bp Feature: gene Location: 805723-806013 bp Feature: gene Location: 806329-807603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806569-807184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806569-807184 bp Feature: domain Description: GIIM Note: maturase Location: 807238-807454 bp Feature: domain Description: GIIM Note: maturase Location: 80723 8-807454 bp Feature: gene Location: 807683-809053 bp Feature: domain Description: PRK09356 Location: 807842-809045 bp Feature: domain Description: PRK093 56 Location: 807842-809045 bp Feature: gene Location: 809050-810585 bp Feature: domain Description: hutH Location: 809059-810574 bp Feature: domain Description: hutH Location: 809059-810574 bp Feature: gene Location: 1114321-1114755 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1114327-1114540 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11143 27-1114540 bp Feature: gene Location: 1115335-1116606 bp Feature: domain Description: Beta_helix Location: 1115404-1115524 bp Feature: domain Description: Beta_helix Location: 1115404-1115524 bp Feature: gene Location: 1117262-1118608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117553-1118240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117553 -1118240 bp Feature: gene Location: 1119182-1119418 bp Feature: domain Description: Transposase_mut Location: 1119185-1119377 bp Feature: domain Description: Transposase_mut Location: 1119185-11193 77 bp Feature: gene Location: 1119279-1119617 bp Feature: gene Location: 1124499-1125605 bp Feature: domain Description: Glf Location: 1124502-1125582 bp Feature: domain Description: Glf Location: 1124502-1125582 bp Feature: gene Location: 1127312-1127827 bp Feature: domain Description: DDE_3 Location: 1127342-1127741 bp Feature: domain Description: DDE_3 Location: 11273 42-1127741 bp Feature: gene Location: 1127881-1129089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128046-1128700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128046-1128700 bp Feature: domain Description: GIIM Note: maturase Location: 1128781-1129003 bp Feature: domain Description: GIIM Note: maturase Location: 1128781-1129003 bp Feature: gene Location: 1129756-1130139 bp Feature: domain Description: COG3415 Location: 1129762-1130110 bp Feature: domain Description: COG3 415 Location: 1129762-113 0110 bp Feature: gene Location: 1130349-1130579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), fabG (PRK12825), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225), DDE_Tnp_IS66 (pfam03050), Beta_helix (pfam13229), Transposase_mut (pfam00872)
Glf (COG0562), DDE_3 (pfam13358), COG3415 (Transposase )