myRT

myRT report for GCA_000305775.1_ASM30577v1

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Seq: CP003869.1 Dehalobacter sp. DCA, complete genome (3069953 bp)
Overview 1 RT 1: 345483-352228 bp 2 RT 2: 544675-550771 bp 3 RT 3: 707651-716319 bp 4 RT 4: 930962-943432 bp 5 RT 5: 1027056-1033836 bp 6 RT 6: 1222638-1234675 bp 7 RT 7: 1710349-1718845 bp 8 RT 8: 2519610-2530517 bp 9 RT 9: 2955900-2964306 bp Neighborhood of RT #1 [345483, 352248] CitE PRK07232 RVT-GII PRK09776 HDGYP Neighborhood of RT #2 [544675, 550779] TAT_signal RDH CAP_ED HTH_Crp_2 RVT-GII GIIM COG3462 LCB5 Neighborhood of RT #3 [707651, 716354] SH3_3 SH3_3 SH3_3 SH3_3 SH3_3 Peptidase_M14_like YjdB Big_2 Peptidase_M23 RVT-GII GIIM HTH_LUXR Neighborhood of RT #4 [930962, 943432] DDE_5 pfam03781 RVT-GII GIIM VOC_like DUF87 DUF853 SIR2_2 RVT-GII GIIM Neighborhood of RT #5 [1027056, 1033836] PDC1_MCP_like Tar PRK04435 RVT-GII GIIM spore_IV_A Neighborhood of RT #6 [1222638, 1234728] RVT-GII GIIM HNHc xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII RVT-GII cbiD Neighborhood of RT #7 [1710349, 1718845] COG3666 RVT-GII GIIM AlbA_2 DUF4362 RVT-GII GIIM Neighborhood of RT #8 [2519610, 2530519] HelD CW_binding_2 CW_binding_2 CW_binding_2 DUF5105 RVT-GII GIIM RVT-GII GIIM PRK14018 PRK11198 PRK11198 Neighborhood of RT #9 [2955900, 2964317] CsoR-like_DUF156_1 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII atpC atpD Feature: gene Location: 345483-346451 bp Ori: AFV01362.1 Gene: citE Feature: domain Description: CitE Location: 345588-346443 bp Feature: domain Description: CitE Location: 345588-346443 bp Feature: gene Location: 346802-348058 bp Ori: AFV01363.1 Feature: domain Description: PRK07232 Location: 346820-348047 bp Feature: domain Description: PRK07232 Location: 346820-348047 bp Feature: gene Location: 348587-349672 bp Ori: AFV01364.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348917-349532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34891 7-349532 bp Feature: gene Location: 349710-349985 bp Feature: gene Location: 350212-352248 bp Ori: AFV01366.1 Feature: domain Description: PRK09776 Location: 350713-351226 bp Feature: domain Description: PRK09776 Location: 35071 3-351 226 bp Feature: domain Description: HDGYP Location: 351520-352228 bp Feature: domain Description: HDGYP Location: 351 520-352228 bp Feature: gene Location: 544675-546021 bp Ori: AFV01575.1 Gene: rdhA Feature: domain Description: TAT_signal Location: 544726-544792 bp Feature: domain Description: TAT_signal Location: 544726-544792 bp Feature: domain Description: RDH Location: 545149-545968 bp Feature: domain Description: RDH Location: 5451 49-545968 bp Feature: gene Location: 546417-547124 bp Ori: AFV01576.1 Feature: domain Description: CAP_ED Location: 546513-546795 bp Feature: domain Description: CAP_ED Location: 54651 3-546795 bp Feature: domain Description: HTH_Crp_2 Location: 546873-547095 bp Feature: domain Description: HTH_Crp_2 Location: 546873-547095 bp Feature: gene Location: 547628-549025 bp Ori: AFV01577.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547958-548573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547958-548573 bp Feature: domain Description: GIIM Note: maturase Location: 548627-548837 bp Feature: domain Description: GIIM Note: maturase Location: 548627-548837 bp Feature: gene Location: 549147-549413 bp Ori: AFV01578.1 Feature: domain Description: COG3462 Location: 549159-549408 bp Feature: domain Description: COG3462 Location: 5491 59-549408 bp Feature: gene Location: 549835-550779 bp Ori: AFV01579.1 Feature: domain Description: LCB5 Location: 549856-550771 bp Feature: domain Description: LCB5 Location: 549856-550771 bp Feature: gene Location: 707651-711343 bp Ori: AFV01718.1 Feature: domain Description: SH3_3 Location: 708128-708281 bp Feature: domain Description: SH3_3 Location: 7081 28-708281 bp Feature: domain Description: SH3_3 Location: 708362-708530 bp Feature: domain Description: SH3_3 Location: 708362-708530 bp Feature: domain Description: SH3_3 Location: 708587-708731 bp Feature: domain Description: SH3_3 Location: 708587-708731 bp Feature: domain Description: SH3_3 Location: 708809-708968 bp Feature: domain Description: SH3_3 Location: 708809-708968 bp Feature: domain Description: SH3_3 Location: 709271-709433 bp Feature: domain Description: SH3_3 Location: 709271 -709433 bp Feature: domain Description: Peptidase_M14_like Location: 709622-709940 bp Feature: domain Description: Peptidase_M1 4_like Location: 709622-709940 bp Feature: domain Description: YjdB Location: 710189-710450 bp Feature: domain Description: YjdB Location: 71 01 89-71 0450 bp Feature: domain Description: Big_2 Location: 710459-710684 bp Feature: domain Description: Big_2 Location: 71 0459-71 0684 bp Feature: domain Description: Peptidase_M23 Location: 710825-711122 bp Feature: domain Description: Peptidase_M23 Location: 71 0825-71 1 1 22 bp Feature: gene Location: 711443-712513 bp Feature: gene Location: 712770-714167 bp Ori: AFV01720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713100-713715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 31 00-71 371 5 bp Feature: domain Description: GIIM Note: maturase Location: 713769-713979 bp Feature: domain Description: GIIM Note: maturase Location: 71 3769-71 3979 bp Feature: gene Location: 714650-714970 bp Feature: gene Location: 716163-716354 bp Ori: AFV01722.1 Feature: domain Description: HTH_LUXR Location: 716166-716319 bp Feature: domain Description: HTH_LUXR Location: 71 61 66-71 631 9 bp Feature: gene Location: 930962-932404 bp Ori: AFV01914.1 Feature: domain Description: DDE_5 Location: 931157-931793 bp Feature: domain Description: DDE_5 Location: 931 1 57-931 793 bp Feature: gene Location: 932484-932900 bp Ori: AFV01915.1 Feature: domain Description: pfam03781 Location: 932514-932889 bp Feature: domain Description: pfam03781 Location: 93251 4-932889 bp Feature: gene Location: 933128-934474 bp Ori: AFV01916.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933434-934103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933434-9341 03 bp Feature: domain Description: GIIM Note: maturase Location: 934181-934415 bp Feature: domain Description: GIIM Note: maturase Location: 9341 81 -93441 5 bp Feature: gene Location: 935059-935529 bp Ori: AFV01917.1 Feature: domain Description: VOC_like Location: 935062-935419 bp Feature: domain Description: VOC_like Location: 935062-93541 9 bp Feature: gene Location: 935763-935900 bp Feature: gene Location: 936666-938441 bp Ori: AFV01920.1 Feature: domain Description: DUF87 Location: 937080-937929 bp Feature: domain Description: DUF87 Location: 937080-937929 bp Feature: domain Description: DUF853 Location: 937962-938280 bp Feature: domain Description: DUF853 Location: 937962-938280 bp Feature: gene Location: 938438-939736 bp Ori: AFV01921.1 Feature: domain Description: SIR2_2 Location: 938924-939380 bp Feature: domain Description: SIR2_2 Location: 938924-939380 bp Feature: gene Location: 940874-942163 bp Ori: AFV01922.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941174-941807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 1 74-941 807 bp Feature: domain Description: GIIM Note: maturase Location: 941894-942113 bp Feature: domain Description: GIIM Note: maturase Location: 941 894-9421 1 3 bp Feature: gene Location: 942784-942933 bp Feature: gene Location: 943307-943432 bp Feature: gene Location: 1027056-1029107 bp Ori: AFV02009.1 Feature: domain Description: PDC1_MCP_like Location: 1027281-1027650 bp Feature: domain Description: PDC1 _MCP_like Location: 1 027281 -1 027650 bp Feature: domain Description: Tar Location: 1027830-1029102 bp Feature: domain Description: Tar Location: 1 027830-1 0291 02 bp Feature: gene Location: 1029423-1029869 bp Ori: AFV02010.1 Feature: domain Description: PRK04435 Location: 1029432-1029864 bp Feature: domain Description: PRK04435 Location: 1 029432-1 029864 bp Feature: gene Location: 1030015-1031412 bp Ori: AFV02011.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030345-1030960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 030345-1 030960 bp Feature: domain Description: GIIM Note: maturase Location: 1031014-1031224 bp Feature: domain Description: GIIM Note: maturase Location: 1 031 01 4-1 031 224 bp Feature: gene Location: 1031923-1033404 bp Ori: AFV02012.1 Gene: spoIVA Feature: domain Description: spore_IV_A Location: 1031926-1033402 bp Feature: domain Description: spore_IV_A Location: 1 031 926-1 033402 bp Feature: gene Location: 1033657-1033836 bp Feature: gene Location: 1222638-1223324 bp Feature: gene Location: 1223450-1224343 bp Feature: gene Location: 1224748-1225749 bp Ori: AFV02214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224784-1224985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 224784-1 224985 bp Feature: domain Description: GIIM Note: maturase Location: 1225048-1225282 bp Feature: domain Description: GIIM Note: maturase Location: 1 225048-1 225282 bp Feature: domain Description: HNHc Note: nucleases Location: 1225483-1225654 bp Feature: domain Description: HNHc Note: nucleases Location: 1 225483-1 225654 bp Feature: gene Location: 1225943-1227178 bp Ori: AFV02215.1 Feature: domain Description: xerS Location: 1226303-1226420 bp Feature: domain Description: xerS Location: 1 226303-1 226420 bp Feature: domain Description: INT_RitA_C_like Location: 1226612-1227146 bp Feature: domain Description: INT_RitA_C_like Location: 1 22661 2-1 2271 46 bp Feature: gene Location: 1227171-1228157 bp Ori: AFV02216.1 Gene: xerD Feature: domain Description: INT_RitB_C_like Location: 1227507-1228092 bp Feature: domain Description: INT_RitB_C_like Location: 1 227507-1 228092 bp Feature: gene Location: 1228144-1229157 bp Ori: AFV02217.1 Gene: xerD Feature: domain Description: Phage_int_SAM_1 Location: 1228192-1228441 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 2281 92-1 228441 bp Feature: domain Description: INT_RitC_C_like Location: 1228522-1229074 bp Feature: domain Description: INT_RitC_C_like Location: 1 228522-1 229074 bp Feature: gene Location: 1229259-1229993 bp Ori: AFV02218.1 Gene: ykfC Feature: domain Description: RVT_N Location: 1229307-1229550 bp Feature: domain Description: RVT_N Location: 1 229307-1 229550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229607-1229985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 229607-1 229985 bp Feature: gene Location: 1230657-1232468 bp Ori: AFV02219.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230966-1231668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 230966-1 231 668 bp Feature: gene Location: 1233288-1233422 bp Feature: gene Location: 1233601-1234728 bp Ori: AFV02221.1 Feature: domain Description: cbiD Location: 1233616-1234675 bp Feature: domain Description: cbiD Location: 1 23361 6-1 234675 bp Feature: gene Location: 1710349-1710915 bp Ori: AFV02723.1 Feature: domain Description: COG3666 Location: 1710367-1710820 bp Feature: domain Description: COG3666 Location: 1 71 0367-1 71 0820 bp Feature: gene Location: 1711151-1711909 bp Feature: gene Location: 1712113-1713474 bp Ori: AFV02725.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712419-1713109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 241 9-1 71 31 09 bp Feature: domain Description: GIIM Note: maturase Location: 1713202-1713394 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 3202-1 71 3394 bp Feature: gene Location: 1713999-1715183 bp Ori: AFV02726.1 Feature: domain Description: AlbA_2 Location: 1714074-1714452 bp Feature: domain Description: AlbA_2 Location: 1 71 4074-1 71 4452 bp Feature: gene Location: 1715389-1715706 bp Ori: AFV02727.1 Feature: domain Description: DUF4362 Location: 1715401-1715617 bp Feature: domain Description: DUF4362 Location: 1 71 5401 -1 71 561 7 bp Feature: gene Location: 1715992-1716519 bp Feature: gene Location: 1716623-1717969 bp Ori: AFV02729.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1716929-1717598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 6929-1 71 7598 bp Feature: domain Description: GIIM Note: maturase Location: 1717676-1717910 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 7676-1 71 791 0 bp Feature: gene Location: 1718027-1718140 bp Feature: gene Location: 1718633-1718845 bp Feature: gene Location: 2519610-2521850 bp Ori: AFV03502.1 Feature: domain Description: HelD Location: 2519820-2521833 bp Feature: domain Description: HelD Location: 251 9820-2521 833 bp Feature: gene Location: 2521859-2523367 bp Ori: AFV03503.1 Feature: domain Description: CW_binding_2 Location: 2521976-2522240 bp Feature: domain Description: CW_binding_2 Location: 2521 976-2522240 bp Feature: domain Description: CW_binding_2 Location: 2522273-2522546 bp Feature: domain Description: CW_binding_2 Location: 2522273-2522546 bp Feature: domain Description: CW_binding_2 Location: 2522570-2522822 bp Feature: domain Description: CW_binding_2 Location: 2522570-2522822 bp Feature: domain Description: DUF5105 Location: 2523017-2523347 bp Feature: domain Description: DUF51 05 Location: 252301 7-2523347 bp Feature: gene Location: 2523602-2524999 bp Ori: AFV03504.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523932-2524547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523932-2524547 bp Feature: domain Description: GIIM Note: maturase Location: 2524601-2524811 bp Feature: domain Description: GIIM Note: maturase Location: 2524601 -252481 1 bp Feature: gene Location: 2525500-2526897 bp Ori: AFV03505.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2525830-2526445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2525830-2526445 bp Feature: domain Description: GIIM Note: maturase Location: 2526499-2526709 bp Feature: domain Description: GIIM Note: maturase Location: 2526499-2526709 bp Feature: gene Location: 2527539-2528489 bp Ori: AFV03506.1 Feature: domain Description: PRK14018 Location: 2527548-2528487 bp Feature: domain Description: PRK1 401 8 Location: 2527548-2528487 bp Feature: gene Location: 2529011-2530519 bp Ori: AFV03507.1 Feature: domain Description: PRK11198 Location: 2530166-2530322 bp Feature: domain Description: PRK1 1 1 98 Location: 25301 66-2530322 bp Feature: domain Description: PRK11198 Location: 2530358-2530517 bp Feature: domain Description: PRK1 1 1 98 Location: 2530358-253051 7 bp Feature: gene Location: 2955900-2956532 bp Feature: gene Location: 2956742-2957044 bp Ori: AFV03895.1 Feature: domain Description: CsoR-like_DUF156_1 Location: 2956799-2957039 bp Feature: domain Description: CsoR-like_DUF1 56_1 Location: 2956799-2957039 bp Feature: gene Location: 2957167-2957817 bp Ori: AFV03896.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2957170-2957380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29571 70-2957380 bp Feature: domain Description: GIIM Note: maturase Location: 2957431-2957662 bp Feature: domain Description: GIIM Note: maturase Location: 2957431 -2957662 bp Feature: gene Location: 2957941-2958954 bp Ori: AFV03897.1 Feature: domain Description: Phage_int_SAM_1 Location: 2957989-2958238 bp Feature: domain Description: Phage_int_SAM_1 Location: 2957989-2958238 bp Feature: domain Description: INT_RitC_C_like Location: 2958319-2958871 bp Feature: domain Description: INT_RitC_C_like Location: 295831 9-2958871 bp Feature: gene Location: 2958941-2959927 bp Ori: AFV03898.1 Gene: xerD Feature: domain Description: INT_RitB_C_like Location: 2959277-2959862 bp Feature: domain Description: INT_RitB_C_like Location: 2959277-2959862 bp Feature: gene Location: 2959920-2961155 bp Ori: AFV03899.1 Feature: domain Description: xerS Location: 2960280-2960397 bp Feature: domain Description: xerS Location: 2960280-2960397 bp Feature: domain Description: INT_RitA_C_like Location: 2960589-2961123 bp Feature: domain Description: INT_RitA_C_like Location: 2960589-2961 1 23 bp Feature: gene Location: 2961309-2962049 bp Ori: AFV03900.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2961663-2962044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2961 663-2962044 bp Feature: gene Location: 2962510-2962911 bp Ori: AFV03901.1 Gene: atpC Feature: domain Description: atpC Location: 2962513-2962906 bp Feature: domain Description: atpC Location: 296251 3-2962906 bp Feature: gene Location: 2962914-2964317 bp Ori: AFV03902.1 Gene: atpD Feature: domain Description: atpD Location: 2962926-2964306 bp Feature: domain Description: atpD Location: 2962926-2964306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitE (COG2301), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), RVT-GII, PRK09776 (putative diguanylate cyclase; Provisional), HDGYP (COG2206), TAT_signal (pfam10518), RDH (TIGR02486), CAP_ED (cl00047), HTH_Crp_2 (pfam13545), GIIM (pfam08388)
COG3462 (Uncharacterized membrane protein ), LCB5 (COG1597), SH3_3 (pfam08239), Peptidase_M14_like (cl11393), YjdB (COG5492), Big_2 (pfam02368), Peptidase_M23 (pfam01551), HTH_LUXR (smart00421), DDE_5 (pfam13546), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)
VOC_like (cd16355), DUF87 (pfam01935), DUF853 (pfam05872), SIR2_2 (pfam13289), PDC1_MCP_like (cd12913), Tar (COG0840), PRK04435 (ACT domain-containing protein), spore_IV_A (TIGR02836), HNHc (smart00507), xerS (PRK05084)
INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT_N (pfam13655), cbiD (TIGR00312), COG3666 (Transposase ), AlbA_2 (pfam04326), DUF4362 (pfam14275), HelD (COG3973)
CW_binding_2 (pfam04122), DUF5105 (pfam17118), PRK14018 (bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB), PRK11198 (LysM domain/BON superfamily protein; Provisional), CsoR-like_DUF156_1 (cd10158), atpC (PRK14736), atpD (TIGR01039)