myRT

myRT report for GCA_000305815.1_ASM30581v1

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Seq: CP003870.1 Dehalobacter sp. CF, complete genome (3092048 bp)
Overview 1 RT 1: 413090-420314 bp 2 RT 2: 609119-615215 bp 3 RT 3: 774237-782906 bp 4 RT 4: 995583-1007554 bp 5 RT 5: 1301177-1314529 bp 6 RT 6: 1738010-1746506 bp 7 RT 7: 2547227-2558134 bp 8 RT 8: 2975870-2982876 bp Neighborhood of RT #1 [413090, 420314] CitE PRK07232 RVT-GII GIIM PRK09776 HDGYP Neighborhood of RT #2 [609119, 615223] TAT_signal RDH CAP_ED HTH_Crp_2 RVT-GII GIIM COG3462 LCB5 Neighborhood of RT #3 [774237, 782941] SH3_3 SH3_3 SH3_3 SH3_3 SH3_3 Peptidase_M14_like YjdB Big_2 Peptidase_M23 RVT-GII GIIM HTH_LUXR Neighborhood of RT #4 [995583, 1007554] DDE_5 pfam03781 RVT-GII GIIM VOC_like DUF87 DUF853 SIR2_2 RVT-GII GIIM Neighborhood of RT #5 [1301177, 1314537] RVT-GII GIIM HNHc xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII RVT-GII cbiD PHA02517 Neighborhood of RT #6 [1738010, 1746506] RVT-GII GIIM AlbA_2 DUF4362 RVT-GII GIIM Neighborhood of RT #7 [2547227, 2558136] HelD CW_binding_2 CW_binding_2 CW_binding_2 DUF5105 RVT-GII GIIM RVT-GII GIIM PRK14018 PRK11198 PRK11198 Neighborhood of RT #8 [2975870, 2982881] CsoR-like_DUF156_1 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII atpC Feature: gene Location: 413090-414058 bp Ori: AFV04402.1 Feature: domain Description: CitE Location: 413195-414050 bp Feature: domain Description: CitE Location: 41 31 95-41 4050 bp Feature: gene Location: 414409-415665 bp Ori: AFV04403.1 Feature: domain Description: PRK07232 Location: 414427-415654 bp Feature: domain Description: PRK07232 Location: 41 4427-41 5654 bp Feature: gene Location: 416194-417591 bp Ori: AFV04404.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416524-417139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6524-41 71 39 bp Feature: domain Description: GIIM Note: maturase Location: 417193-417403 bp Feature: domain Description: GIIM Note: maturase Location: 41 71 93-41 7403 bp Feature: gene Location: 417818-419854 bp Ori: AFV04405.1 Feature: domain Description: PRK09776 Location: 418319-418832 bp Feature: domain Description: PRK09776 Location: 41 831 9-41 8832 bp Feature: domain Description: HDGYP Location: 419126-419834 bp Feature: domain Description: HDGYP Location: 41 91 26-41 9834 bp Feature: gene Location: 420195-420314 bp Feature: gene Location: 609119-610465 bp Ori: AFV04610.1 Gene: rdhA Feature: domain Description: TAT_signal Location: 609170-609236 bp Feature: domain Description: TAT_signal Location: 6091 70-609236 bp Feature: domain Description: RDH Location: 609593-610412 bp Feature: domain Description: RDH Location: 609593-61 041 2 bp Feature: gene Location: 610861-611568 bp Ori: AFV04611.1 Feature: domain Description: CAP_ED Location: 610957-611239 bp Feature: domain Description: CAP_ED Location: 61 0957-61 1 239 bp Feature: domain Description: HTH_Crp_2 Location: 611317-611539 bp Feature: domain Description: HTH_Crp_2 Location: 61 1 31 7-61 1 539 bp Feature: gene Location: 612072-613469 bp Ori: AFV04612.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612402-613017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 2402-61 301 7 bp Feature: domain Description: GIIM Note: maturase Location: 613071-613281 bp Feature: domain Description: GIIM Note: maturase Location: 61 3071 -61 3281 bp Feature: gene Location: 613591-613857 bp Ori: AFV04613.1 Feature: domain Description: COG3462 Location: 613603-613852 bp Feature: domain Description: COG3462 Location: 61 3603-61 3852 bp Feature: gene Location: 614279-615223 bp Ori: AFV04614.1 Feature: domain Description: LCB5 Location: 614300-615215 bp Feature: domain Description: LCB5 Location: 61 4300-61 521 5 bp Feature: gene Location: 774237-777929 bp Ori: AFV04756.1 Feature: domain Description: SH3_3 Location: 774714-774867 bp Feature: domain Description: SH3_3 Location: 77471 4-774867 bp Feature: domain Description: SH3_3 Location: 774948-775116 bp Feature: domain Description: SH3_3 Location: 774948-7751 1 6 bp Feature: domain Description: SH3_3 Location: 775173-775317 bp Feature: domain Description: SH3_3 Location: 7751 73-77531 7 bp Feature: domain Description: SH3_3 Location: 775395-775554 bp Feature: domain Description: SH3_3 Location: 775395-775554 bp Feature: domain Description: SH3_3 Location: 775857-776019 bp Feature: domain Description: SH3_3 Location: 775857-77601 9 bp Feature: domain Description: Peptidase_M14_like Location: 776208-776526 bp Feature: domain Description: Peptidase_M1 4_like Location: 776208-776526 bp Feature: domain Description: YjdB Location: 776775-777036 bp Feature: domain Description: YjdB Location: 776775-777036 bp Feature: domain Description: Big_2 Location: 777045-777270 bp Feature: domain Description: Big_2 Location: 777045-777270 bp Feature: domain Description: Peptidase_M23 Location: 777411-777708 bp Feature: domain Description: Peptidase_M23 Location: 77741 1 -777708 bp Feature: gene Location: 778029-779099 bp Feature: gene Location: 779356-780753 bp Ori: AFV04758.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779686-780301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779686-780301 bp Feature: domain Description: GIIM Note: maturase Location: 780355-780565 bp Feature: domain Description: GIIM Note: maturase Location: 780355-780565 bp Feature: gene Location: 781237-781557 bp Feature: gene Location: 782750-782941 bp Ori: AFV04760.1 Feature: domain Description: HTH_LUXR Location: 782753-782906 bp Feature: domain Description: HTH_LUXR Location: 782753-782906 bp Feature: gene Location: 995583-997025 bp Ori: AFV04948.1 Feature: domain Description: DDE_5 Location: 995778-996414 bp Feature: domain Description: DDE_5 Location: 995778-99641 4 bp Feature: gene Location: 997105-997521 bp Ori: AFV04949.1 Feature: domain Description: pfam03781 Location: 997135-997510 bp Feature: domain Description: pfam03781 Location: 9971 35-99751 0 bp Feature: gene Location: 997749-999095 bp Ori: AFV04950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998055-998724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998055-998724 bp Feature: domain Description: GIIM Note: maturase Location: 998802-999036 bp Feature: domain Description: GIIM Note: maturase Location: 998802-999036 bp Feature: gene Location: 999153-999266 bp Feature: gene Location: 999680-1000150 bp Ori: AFV04952.1 Feature: domain Description: VOC_like Location: 999683-1000040 bp Feature: domain Description: VOC_like Location: 999683-1 000040 bp Feature: gene Location: 1001287-1003062 bp Ori: AFV04955.1 Feature: domain Description: DUF87 Location: 1001701-1002550 bp Feature: domain Description: DUF87 Location: 1 001 701 -1 002550 bp Feature: domain Description: DUF853 Location: 1002583-1002901 bp Feature: domain Description: DUF853 Location: 1 002583-1 002901 bp Feature: gene Location: 1003059-1004357 bp Ori: AFV04956.1 Feature: domain Description: SIR2_2 Location: 1003545-1004001 bp Feature: domain Description: SIR2_2 Location: 1 003545-1 004001 bp Feature: gene Location: 1005495-1006784 bp Ori: AFV04957.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1005795-1006428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 005795-1 006428 bp Feature: domain Description: GIIM Note: maturase Location: 1006515-1006734 bp Feature: domain Description: GIIM Note: maturase Location: 1 00651 5-1 006734 bp Feature: gene Location: 1007003-1007167 bp Feature: gene Location: 1007405-1007554 bp Feature: gene Location: 1301177-1301863 bp Feature: gene Location: 1301989-1302882 bp Feature: gene Location: 1303287-1304288 bp Ori: AFV05258.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303323-1303524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303323-1 303524 bp Feature: domain Description: GIIM Note: maturase Location: 1303587-1303821 bp Feature: domain Description: GIIM Note: maturase Location: 1 303587-1 303821 bp Feature: domain Description: HNHc Note: nucleases Location: 1304022-1304193 bp Feature: domain Description: HNHc Note: nucleases Location: 1 304022-1 3041 93 bp Feature: gene Location: 1304482-1305717 bp Ori: AFV05259.1 Feature: domain Description: xerS Location: 1304842-1304959 bp Feature: domain Description: xerS Location: 1 304842-1 304959 bp Feature: domain Description: INT_RitA_C_like Location: 1305151-1305685 bp Feature: domain Description: INT_RitA_C_like Location: 1 3051 51 -1 305685 bp Feature: gene Location: 1305710-1306696 bp Ori: AFV05260.1 Feature: domain Description: INT_RitB_C_like Location: 1306046-1306631 bp Feature: domain Description: INT_RitB_C_like Location: 1 306046-1 306631 bp Feature: gene Location: 1306683-1307696 bp Ori: AFV05261.1 Feature: domain Description: Phage_int_SAM_1 Location: 1306731-1306980 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 306731 -1 306980 bp Feature: domain Description: INT_RitC_C_like Location: 1307061-1307613 bp Feature: domain Description: INT_RitC_C_like Location: 1 307061 -1 30761 3 bp Feature: gene Location: 1307798-1308532 bp Ori: AFV05262.1 Feature: domain Description: RVT_N Location: 1307846-1308089 bp Feature: domain Description: RVT_N Location: 1 307846-1 308089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308146-1308524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3081 46-1 308524 bp Feature: gene Location: 1309196-1311007 bp Ori: AFV05263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1309505-1310207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 309505-1 31 0207 bp Feature: gene Location: 1312140-1313267 bp Ori: AFV05264.1 Feature: domain Description: cbiD Location: 1312155-1313214 bp Feature: domain Description: cbiD Location: 1 31 21 55-1 31 321 4 bp Feature: gene Location: 1313704-1314537 bp Ori: AFV05265.1 Feature: domain Description: PHA02517 Location: 1313764-1314529 bp Feature: domain Description: PHA0251 7 Location: 1 31 3764-1 31 4529 bp Feature: gene Location: 1738010-1738189 bp Feature: gene Location: 1738812-1739570 bp Feature: gene Location: 1739774-1741135 bp Ori: AFV05709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1740080-1740770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 740080-1 740770 bp Feature: domain Description: GIIM Note: maturase Location: 1740863-1741055 bp Feature: domain Description: GIIM Note: maturase Location: 1 740863-1 741 055 bp Feature: gene Location: 1741163-1741390 bp Feature: gene Location: 1741660-1742844 bp Ori: AFV05711.1 Feature: domain Description: AlbA_2 Location: 1741735-1742113 bp Feature: domain Description: AlbA_2 Location: 1 741 735-1 7421 1 3 bp Feature: gene Location: 1743050-1743367 bp Ori: AFV05712.1 Feature: domain Description: DUF4362 Location: 1743062-1743278 bp Feature: domain Description: DUF4362 Location: 1 743062-1 743278 bp Feature: gene Location: 1743653-1744180 bp Feature: gene Location: 1744284-1745630 bp Ori: AFV05714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744590-1745259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 744590-1 745259 bp Feature: domain Description: GIIM Note: maturase Location: 1745337-1745571 bp Feature: domain Description: GIIM Note: maturase Location: 1 745337-1 745571 bp Feature: gene Location: 1745688-1745801 bp Feature: gene Location: 1746294-1746506 bp Feature: gene Location: 2547227-2549467 bp Ori: AFV06487.1 Feature: domain Description: HelD Location: 2547437-2549450 bp Feature: domain Description: HelD Location: 2547437-2549450 bp Feature: gene Location: 2549476-2550984 bp Ori: AFV06488.1 Feature: domain Description: CW_binding_2 Location: 2549593-2549857 bp Feature: domain Description: CW_binding_2 Location: 2549593-2549857 bp Feature: domain Description: CW_binding_2 Location: 2549890-2550163 bp Feature: domain Description: CW_binding_2 Location: 2549890-25501 63 bp Feature: domain Description: CW_binding_2 Location: 2550187-2550439 bp Feature: domain Description: CW_binding_2 Location: 25501 87-2550439 bp Feature: domain Description: DUF5105 Location: 2550634-2550964 bp Feature: domain Description: DUF51 05 Location: 2550634-2550964 bp Feature: gene Location: 2551219-2552616 bp Ori: AFV06489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2551549-2552164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2551 549-25521 64 bp Feature: domain Description: GIIM Note: maturase Location: 2552218-2552428 bp Feature: domain Description: GIIM Note: maturase Location: 255221 8-2552428 bp Feature: gene Location: 2553117-2554514 bp Ori: AFV06490.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553447-2554062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553447-2554062 bp Feature: domain Description: GIIM Note: maturase Location: 2554116-2554326 bp Feature: domain Description: GIIM Note: maturase Location: 25541 1 6-2554326 bp Feature: gene Location: 2555156-2556106 bp Ori: AFV06491.1 Feature: domain Description: PRK14018 Location: 2555165-2556104 bp Feature: domain Description: PRK1 401 8 Location: 25551 65-25561 04 bp Feature: gene Location: 2556628-2558136 bp Ori: AFV06492.1 Feature: domain Description: PRK11198 Location: 2557783-2557939 bp Feature: domain Description: PRK1 1 1 98 Location: 2557783-2557939 bp Feature: domain Description: PRK11198 Location: 2557975-2558134 bp Feature: domain Description: PRK1 1 1 98 Location: 2557975-25581 34 bp Feature: gene Location: 2975870-2976502 bp Feature: gene Location: 2976712-2977014 bp Ori: AFV06873.1 Feature: domain Description: CsoR-like_DUF156_1 Location: 2976769-2977009 bp Feature: domain Description: CsoR-like_DUF1 56_1 Location: 2976769-2977009 bp Feature: gene Location: 2977137-2977787 bp Ori: AFV06874.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2977140-2977350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29771 40-2977350 bp Feature: domain Description: GIIM Note: maturase Location: 2977401-2977632 bp Feature: domain Description: GIIM Note: maturase Location: 2977401 -2977632 bp Feature: gene Location: 2977911-2978924 bp Ori: AFV06875.1 Feature: domain Description: Phage_int_SAM_1 Location: 2977959-2978208 bp Feature: domain Description: Phage_int_SAM_1 Location: 2977959-2978208 bp Feature: domain Description: INT_RitC_C_like Location: 2978289-2978841 bp Feature: domain Description: INT_RitC_C_like Location: 2978289-2978841 bp Feature: gene Location: 2978911-2979897 bp Ori: AFV06876.1 Feature: domain Description: INT_RitB_C_like Location: 2979247-2979832 bp Feature: domain Description: INT_RitB_C_like Location: 2979247-2979832 bp Feature: gene Location: 2979890-2981125 bp Ori: AFV06877.1 Feature: domain Description: xerS Location: 2980250-2980367 bp Feature: domain Description: xerS Location: 2980250-2980367 bp Feature: domain Description: INT_RitA_C_like Location: 2980559-2981093 bp Feature: domain Description: INT_RitA_C_like Location: 2980559-2981 093 bp Feature: gene Location: 2981279-2982019 bp Ori: AFV06878.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981633-2982014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981 633-298201 4 bp Feature: gene Location: 2982235-2982354 bp Feature: gene Location: 2982480-2982881 bp Ori: AFV06880.1 Gene: atpC Feature: domain Description: atpC Location: 2982483-2982876 bp Feature: domain Description: atpC Location: 2982483-2982876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitE (COG2301), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), RVT-GII, GIIM (pfam08388), PRK09776 (putative diguanylate cyclase; Provisional), HDGYP (COG2206), TAT_signal (pfam10518), RDH (TIGR02486), CAP_ED (cl00047), HTH_Crp_2 (pfam13545)
COG3462 (Uncharacterized membrane protein ), LCB5 (COG1597), SH3_3 (pfam08239), Peptidase_M14_like (cl11393), YjdB (COG5492), Big_2 (pfam02368), Peptidase_M23 (pfam01551), HTH_LUXR (smart00421), DDE_5 (pfam13546), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)
VOC_like (cd16355), DUF87 (pfam01935), DUF853 (pfam05872), SIR2_2 (pfam13289), HNHc (smart00507), xerS (PRK05084), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)
RVT_N (pfam13655), cbiD (TIGR00312), PHA02517 (putative transposase OrfB; Reviewed), AlbA_2 (pfam04326), DUF4362 (pfam14275), HelD (COG3973), CW_binding_2 (pfam04122), DUF5105 (pfam17118), PRK14018 (bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB), PRK11198 (LysM domain/BON superfamily protein; Provisional)
CsoR-like_DUF156_1 (cd10158), atpC (PRK14736)