myRT

myRT report for GCA_000310085.1_ASM31008v1

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Seq: CP003917.1 Alteromonas mediterranea DE1 strain AltDE1 chromosome, complete genome (4643844 bp)
Overview 1 RT 1: 993583-998145 bp 2 RT 2: 1539470-1546239 bp 3 RT 3: 2572047-2579176 bp Neighborhood of RT #1 [993583, 998145] RVT-Retrons AZL_007920_fam Neighborhood of RT #2 [1539470, 1546310] PRK10803 RVT-GII GIIM PRK09375 INT_C_like_1 Neighborhood of RT #3 [2572047, 2579184] CirA RVT-GII GIIM KOG2237 Feature: gene Location: 993583-994083 bp Feature: gene Location: 994076-994813 bp Feature: gene Location: 994971-995933 bp Ori: AFV84416.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 995211-995745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99521 1 -995745 bp Feature: gene Location: 996708-997517 bp Ori: AFV84417.1 Feature: domain Description: AZL_007920_fam Location: 996903-997488 bp Feature: domain Description: AZL_007920_fam Location: 996903-997488 bp Feature: gene Location: 997816-998145 bp Feature: gene Location: 1539470-1540264 bp Ori: AFV84901.1 Feature: domain Description: PRK10803 Location: 1539527-1540259 bp Feature: domain Description: PRK1 0803 Location: 1 539527-1 540259 bp Feature: gene Location: 1540657-1540752 bp Feature: gene Location: 1541044-1542315 bp Ori: AFV84903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1541257-1541878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 541 257-1 541 878 bp Feature: domain Description: GIIM Note: maturase Location: 1541923-1542145 bp Feature: domain Description: GIIM Note: maturase Location: 1 541 923-1 5421 45 bp Feature: gene Location: 1543191-1544246 bp Ori: AFV84904.1 Feature: domain Description: PRK09375 Location: 1543233-1544217 bp Feature: domain Description: PRK09375 Location: 1 543233-1 54421 7 bp Feature: gene Location: 1544553-1546310 bp Ori: AFV84905.1 Feature: domain Description: INT_C_like_1 Location: 1545714-1546239 bp Feature: domain Description: INT_C_like_1 Location: 1 54571 4-1 546239 bp Feature: gene Location: 2572047-2574323 bp Ori: AFV85806.1 Feature: domain Description: CirA Location: 2572083-2574315 bp Feature: domain Description: CirA Location: 2572083-257431 5 bp Feature: gene Location: 2574422-2574778 bp Feature: gene Location: 2574963-2576234 bp Ori: AFV85808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2575176-2575797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25751 76-2575797 bp Feature: domain Description: GIIM Note: maturase Location: 2575842-2576064 bp Feature: domain Description: GIIM Note: maturase Location: 2575842-2576064 bp Feature: gene Location: 2576474-2576671 bp Feature: gene Location: 2577025-2579184 bp Ori: AFV85810.1 Feature: domain Description: KOG2237 Location: 2577178-2579176 bp Feature: domain Description: KOG2237 Location: 25771 78-25791 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AZL_007920_fam (TIGR04052), PRK10803 (tol-pal system protein YbgF; Provisional), RVT-GII, GIIM (pfam08388), PRK09375 (quinolinate synthase NadA), INT_C_like_1 (cd01184), CirA (COG1629), KOG2237 (KOG2237, Predicted serine protease )