myRT

myRT report for GCA_000316625.1_ASM31662v1

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Seq: CP003548.1 Nostoc sp. PCC 7107, complete genome (6329823 bp)
Overview 1 RT 1: 3308170-3311626 bp 2 RT 2: 5416812-5422178 bp 3 RT 3: 6253244-6262755 bp Neighborhood of RT #1 [3308170, 3311769] RVT-CRISPR cas1 HTH_XRE DUF4384 Neighborhood of RT #2 [5416812, 5422178] COG3744 Phd RVT-UG7 alaS Neighborhood of RT #3 [6253244, 6263660] SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 Ribonuc_L-PSP RVT-Retrons ABC2_membrane_2 Feature: gene Location: 3308170-3310188 bp Ori: AFY43443.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3308356-3308965 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3308356-3308965 bp Feature: domain Description: cas1 Location: 3309181-3310159 bp Feature: domain Description: cas1 Location: 33091 81 -331 01 59 bp Feature: gene Location: 3310463-3310741 bp Feature: gene Location: 3311026-3311769 bp Ori: AFY43445.1 Feature: domain Description: HTH_XRE Location: 3311074-3311221 bp Feature: domain Description: HTH_XRE Location: 331 1 074-331 1 221 bp Feature: domain Description: DUF4384 Location: 3311395-3311626 bp Feature: domain Description: DUF4384 Location: 331 1 395-331 1 626 bp Feature: gene Location: 5416812-5417195 bp Ori: AFY45186.1 Feature: domain Description: COG3744 Location: 5416815-5417190 bp Feature: domain Description: COG3744 Location: 541 681 5-541 71 90 bp Feature: gene Location: 5417192-5417431 bp Ori: AFY45187.1 Feature: domain Description: Phd Location: 5417195-5417420 bp Feature: domain Description: Phd Location: 541 71 95-541 7420 bp Feature: gene Location: 5417513-5419057 bp Ori: AFY45188.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5417891-5418314 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 541 7891 -541 831 4 bp Feature: gene Location: 5419197-5421839 bp Ori: AFY45189.1 Feature: domain Description: alaS Location: 5419224-5421825 bp Feature: domain Description: alaS Location: 541 9224-5421 825 bp Feature: gene Location: 5422050-5422178 bp Feature: gene Location: 6253244-6254767 bp Ori: AFY45867.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 6253265-6253415 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 6253265-625341 5 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 6253664-6253772 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 6253664-6253772 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 6254084-6254723 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 6254084-6254723 bp Feature: gene Location: 6256307-6256879 bp Ori: AFY45868.1 Feature: domain Description: Ribonuc_L-PSP Location: 6256496-6256847 bp Feature: domain Description: Ribonuc_L-PSP Location: 6256496-6256847 bp Feature: gene Location: 6257817-6258854 bp Ori: AFY45869.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6257997-6258609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6257997-6258609 bp Feature: gene Location: 6259953-6261671 bp Feature: gene Location: 6261750-6263660 bp Ori: AFY45871.1 Feature: domain Description: ABC2_membrane_2 Location: 6262077-6262755 bp Feature: domain Description: ABC2_membrane_2 Location: 6262077-6262755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), DUF4384 (pfam14326), COG3744 (PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) ), Phd (COG4118), RVT-UG7, alaS (TIGR00344), SPFH_eoslipins_u2 (cd13438), Ribonuc_L-PSP (pfam01042)
RVT-Retrons, ABC2_membrane_2 (pfam12679)