myRT

myRT report for GCA_000316665.1_ASM31666v1

Download annotations/find similar RTs

Seq: CP003549.1 Rivularia sp. PCC 7116, complete genome (8698463 bp)
Overview 1 RT 1: 3023745-3030772 bp 2 RT 2: 3967438-3978654 bp 3 RT 3: 4904169-4908803 bp 4 RT 4: 5154028-5161438 bp 5 RT 5: 6175493-6180890 bp 6 RT 6: 6322353-6330498 bp Neighborhood of RT #1 [3023745, 3030777] HsdM_N N6_Mtase TniQ RVT_N RVT-GII GIIM McrA PRK02083 Neighborhood of RT #2 [3967438, 3978662] FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP RVT-Retrons Uma2 STKc_PknB_like COG3899 BaeS Neighborhood of RT #3 [4904169, 4908841] DUF937 PRK05415 Era_like DUF697 RVT_N RVT-GII GIIM McrA Neighborhood of RT #4 [5154028, 5161521] NHL MRJP PLN02843 RVT_N RVT-GII GIIM HNH Neighborhood of RT #5 [6175493, 6180925] TIGR03985 SpoT RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #6 [6322353, 6330498] HTH_28 rve Mu-transpos_C TPR_12 TPR_10 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 TPR_10 RVT_N RVT-GII GIIM HNH Feature: gene Location: 3023745-3024359 bp Ori: AFY54957.1 Feature: domain Description: HsdM_N Location: 3023754-3024168 bp Feature: domain Description: HsdM_N Location: 3023754-30241 68 bp Feature: domain Description: N6_Mtase Location: 3024204-3024345 bp Feature: domain Description: N6_Mtase Location: 3024204-3024345 bp Feature: gene Location: 3024985-3025974 bp Ori: AFY54958.1 Feature: domain Description: TniQ Location: 3025063-3025507 bp Feature: domain Description: TniQ Location: 3025063-3025507 bp Feature: gene Location: 3026968-3028554 bp Ori: AFY54959.1 Feature: domain Description: RVT_N Location: 3027004-3027244 bp Feature: domain Description: RVT_N Location: 3027004-3027244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027301-3027961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027301 -3027961 bp Feature: domain Description: GIIM Note: maturase Location: 3028018-3028213 bp Feature: domain Description: GIIM Note: maturase Location: 302801 8-302821 3 bp Feature: domain Description: McrA Location: 3028216-3028516 bp Feature: domain Description: McrA Location: 302821 6-302851 6 bp Feature: gene Location: 3029713-3029904 bp Feature: gene Location: 3030010-3030777 bp Ori: AFY54961.1 Feature: domain Description: PRK02083 Location: 3030013-3030772 bp Feature: domain Description: PRK02083 Location: 303001 3-3030772 bp Feature: gene Location: 3967438-3968643 bp Ori: AFY55665.1 Feature: domain Description: FG-GAP Location: 3967633-3967675 bp Feature: domain Description: FG-GAP Location: 3967633-3967675 bp Feature: domain Description: FG-GAP Location: 3967786-3967846 bp Feature: domain Description: FG-GAP Location: 3967786-3967846 bp Feature: domain Description: FG-GAP Location: 3967930-3968008 bp Feature: domain Description: FG-GAP Location: 3967930-3968008 bp Feature: domain Description: FG-GAP Location: 3968341-3968434 bp Feature: domain Description: FG-GAP Location: 3968341 -3968434 bp Feature: domain Description: FG-GAP Location: 3968485-3968530 bp Feature: domain Description: FG-GAP Location: 3968485-3968530 bp Feature: gene Location: 3969001-3970224 bp Ori: AFY55666.1 Feature: domain Description: FG-GAP Location: 3969202-3969244 bp Feature: domain Description: FG-GAP Location: 3969202-3969244 bp Feature: domain Description: FG-GAP Location: 3969343-3969424 bp Feature: domain Description: FG-GAP Location: 3969343-3969424 bp Feature: domain Description: FG-GAP Location: 3969487-3969577 bp Feature: domain Description: FG-GAP Location: 3969487-3969577 bp Feature: domain Description: FG-GAP Location: 3969646-3969715 bp Feature: domain Description: FG-GAP Location: 3969646-396971 5 bp Feature: domain Description: FG-GAP Location: 3969781-3969862 bp Feature: domain Description: FG-GAP Location: 3969781 -3969862 bp Feature: domain Description: FG-GAP Location: 3969928-3969979 bp Feature: domain Description: FG-GAP Location: 3969928-3969979 bp Feature: domain Description: FG-GAP Location: 3970072-3970144 bp Feature: domain Description: FG-GAP Location: 3970072-39701 44 bp Feature: gene Location: 3970324-3971736 bp Ori: AFY55667.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3970873-3971488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3970873-3971 488 bp Feature: gene Location: 3971951-3972574 bp Ori: AFY55668.1 Feature: domain Description: Uma2 Location: 3971999-3972554 bp Feature: domain Description: Uma2 Location: 3971 999-3972554 bp Feature: gene Location: 3972993-3978662 bp Ori: AFY55669.1 Feature: domain Description: STKc_PknB_like Location: 3973170-3973944 bp Feature: domain Description: STKc_PknB_like Location: 39731 70-3973944 bp Feature: domain Description: COG3899 Location: 3974037-3976713 bp Feature: domain Description: COG3899 Location: 3974037-397671 3 bp Feature: domain Description: BaeS Location: 3977616-3978654 bp Feature: domain Description: BaeS Location: 397761 6-3978654 bp Feature: gene Location: 4904169-4904693 bp Ori: AFY56373.1 Feature: domain Description: DUF937 Location: 4904232-4904559 bp Feature: domain Description: DUF937 Location: 4904232-4904559 bp Feature: gene Location: 4904918-4906468 bp Ori: AFY56374.1 Feature: domain Description: PRK05415 Location: 4904936-4905287 bp Feature: domain Description: PRK0541 5 Location: 4904936-4905287 bp Feature: domain Description: Era_like Location: 4905326-4905851 bp Feature: domain Description: Era_like Location: 4905326-4905851 bp Feature: domain Description: DUF697 Location: 4905899-4906370 bp Feature: domain Description: DUF697 Location: 4905899-4906370 bp Feature: gene Location: 4907255-4908841 bp Ori: AFY56375.1 Feature: domain Description: RVT_N Location: 4907291-4907531 bp Feature: domain Description: RVT_N Location: 4907291 -4907531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4907588-4908248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4907588-4908248 bp Feature: domain Description: GIIM Note: maturase Location: 4908305-4908500 bp Feature: domain Description: GIIM Note: maturase Location: 4908305-4908500 bp Feature: domain Description: McrA Location: 4908503-4908803 bp Feature: domain Description: McrA Location: 4908503-4908803 bp Feature: gene Location: 5154028-5155209 bp Ori: AFY56549.1 Feature: domain Description: NHL Location: 5154181-5154223 bp Feature: domain Description: NHL Location: 51 541 81 -51 54223 bp Feature: domain Description: MRJP Location: 5154352-5155183 bp Feature: domain Description: MRJP Location: 51 54352-51 551 83 bp Feature: gene Location: 5155648-5158536 bp Ori: AFY56550.1 Feature: domain Description: PLN02843 Location: 5155708-5158522 bp Feature: domain Description: PLN02843 Location: 51 55708-51 58522 bp Feature: gene Location: 5159728-5161521 bp Ori: AFY56551.1 Feature: domain Description: RVT_N Location: 5159776-5160016 bp Feature: domain Description: RVT_N Location: 51 59776-51 6001 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5160070-5160709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 60070-51 60709 bp Feature: domain Description: GIIM Note: maturase Location: 5160784-5161015 bp Feature: domain Description: GIIM Note: maturase Location: 51 60784-51 61 01 5 bp Feature: domain Description: HNH Note: nucleases Location: 5161303-5161438 bp Feature: domain Description: HNH Note: nucleases Location: 51 61 303-51 61 438 bp Feature: gene Location: 6175493-6177022 bp Ori: AFY57341.1 Feature: domain Description: TIGR03985 Location: 6176237-6177005 bp Feature: domain Description: TIGR03985 Location: 61 76237-61 77005 bp Feature: gene Location: 6177292-6177882 bp Ori: AFY57342.1 Feature: domain Description: SpoT Location: 6177331-6177850 bp Feature: domain Description: SpoT Location: 61 77331 -61 77850 bp Feature: gene Location: 6178420-6179382 bp Ori: AFY57343.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6178621-6179227 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 61 78621 -61 79227 bp Feature: gene Location: 6179427-6180551 bp Ori: AFY57344.1 Feature: domain Description: Cas1_I-II-III Location: 6179559-6180513 bp Feature: domain Description: Cas1 _I-II-III Location: 61 79559-61 8051 3 bp Feature: gene Location: 6180650-6180925 bp Ori: AFY57345.1 Feature: domain Description: Cas2_I_II_III Location: 6180659-6180890 bp Feature: domain Description: Cas2_I_II_III Location: 61 80659-61 80890 bp Feature: gene Location: 6322353-6324056 bp Ori: AFY57448.1 Feature: domain Description: HTH_28 Location: 6322461-6322629 bp Feature: domain Description: HTH_28 Location: 6322461 -6322629 bp Feature: domain Description: rve Location: 6322917-6323313 bp Feature: domain Description: rve Location: 632291 7-632331 3 bp Feature: domain Description: Mu-transpos_C Location: 6323544-6323721 bp Feature: domain Description: Mu-transpos_C Location: 6323544-6323721 bp Feature: gene Location: 6324329-6325951 bp Ori: AFY57449.1 Feature: domain Description: TPR_12 Location: 6324404-6324584 bp Feature: domain Description: TPR_1 2 Location: 6324404-6324584 bp Feature: domain Description: TPR_10 Location: 6324611-6324728 bp Feature: domain Description: TPR_1 0 Location: 632461 1 -6324728 bp Feature: domain Description: TPR_12 Location: 6324737-6324962 bp Feature: domain Description: TPR_1 2 Location: 6324737-6324962 bp Feature: domain Description: TPR_10 Location: 6324989-6325112 bp Feature: domain Description: TPR_1 0 Location: 6324989-63251 1 2 bp Feature: domain Description: TPR_12 Location: 6325118-6325340 bp Feature: domain Description: TPR_1 2 Location: 63251 1 8-6325340 bp Feature: domain Description: TPR_12 Location: 6325373-6325592 bp Feature: domain Description: TPR_1 2 Location: 6325373-6325592 bp Feature: domain Description: TPR_12 Location: 6325628-6325832 bp Feature: domain Description: TPR_1 2 Location: 6325628-6325832 bp Feature: domain Description: TPR_10 Location: 6325874-6325943 bp Feature: domain Description: TPR_1 0 Location: 6325874-6325943 bp Feature: gene Location: 6326547-6328340 bp Ori: AFY57450.1 Feature: domain Description: RVT_N Location: 6326595-6326835 bp Feature: domain Description: RVT_N Location: 6326595-6326835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6326889-6327528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6326889-6327528 bp Feature: domain Description: GIIM Note: maturase Location: 6327603-6327834 bp Feature: domain Description: GIIM Note: maturase Location: 6327603-6327834 bp Feature: domain Description: HNH Note: nucleases Location: 6328122-6328257 bp Feature: domain Description: HNH Note: nucleases Location: 63281 22-6328257 bp Feature: gene Location: 6329971-6330333 bp Feature: gene Location: 6330364-6330498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM_N (pfam12161), N6_Mtase (pfam02384), TniQ (pfam06527), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK02083 (imidazole glycerol phosphate synthase subunit HisF; Provisional), FG-GAP (pfam01839), RVT-Retrons
Uma2 (pfam05685), STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), BaeS (COG0642), DUF937 (pfam06078), PRK05415 (hypothetical protein; Provisional), Era_like (cd00880), DUF697 (pfam05128), NHL (pfam01436), MRJP (pfam03022)
PLN02843 (isoleucyl-tRNA synthetase), HNH (pfam01844), TIGR03985 (CRISPR-associated protein, TIGR03985 family), SpoT (COG0317), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), HTH_28 (pfam13518), rve (pfam00665), Mu-transpos_C (pfam09299)
TPR_12 (pfam13424), TPR_10 (pfam13374)