myRT

myRT report for GCA_000317435.1_ASM31743v1

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Seq: CP003610.1 Calothrix sp. PCC 6303, complete genome (6767834 bp)
Overview 1 RT 1: 309455-318978 bp 2 RT 2: 3411570-3419067 bp 3 RT 3: 3512510-3518934 bp 4 RT 4: 6713554-6720134 bp Neighborhood of RT #1 [309455, 319016] TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_10 CHAT HTH_XRE DUF4384 RVT-CRISPR cas1 Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [3411570, 3419219] GT4_sucrose_synthase RVT_N RVT-GII McrA COG5592 LplA Neighborhood of RT #3 [3512510, 3518951] ALP MltA RVT_N RVT-GII McrA COG4299 Fur Neighborhood of RT #4 [6713554, 6720136] SLATT_5 RVT-UG17 Dob10 PRK11880 Feature: gene Location: 309455-313120 bp Ori: AFY99360.1 Feature: domain Description: TPR_12 Location: 309521-309704 bp Feature: domain Description: TPR_1 2 Location: 309521 -309704 bp Feature: domain Description: TPR_12 Location: 309731-309956 bp Feature: domain Description: TPR_1 2 Location: 309731 -309956 bp Feature: domain Description: TPR_12 Location: 309986-310211 bp Feature: domain Description: TPR_1 2 Location: 309986-31 021 1 bp Feature: domain Description: TPR_12 Location: 310241-310448 bp Feature: domain Description: TPR_1 2 Location: 31 0241 -31 0448 bp Feature: domain Description: TPR_12 Location: 310490-310718 bp Feature: domain Description: TPR_1 2 Location: 31 0490-31 071 8 bp Feature: domain Description: TPR_12 Location: 310742-310955 bp Feature: domain Description: TPR_1 2 Location: 31 0742-31 0955 bp Feature: domain Description: TPR_12 Location: 310994-311213 bp Feature: domain Description: TPR_1 2 Location: 31 0994-31 1 21 3 bp Feature: domain Description: TPR_10 Location: 311249-311315 bp Feature: domain Description: TPR_1 0 Location: 31 1 249-31 1 31 5 bp Feature: domain Description: CHAT Location: 312080-313115 bp Feature: domain Description: CHAT Location: 31 2080-31 31 1 5 bp Feature: gene Location: 313460-314212 bp Ori: AFY99361.1 Feature: domain Description: HTH_XRE Location: 313511-313655 bp Feature: domain Description: HTH_XRE Location: 31 351 1 -31 3655 bp Feature: domain Description: DUF4384 Location: 313838-314069 bp Feature: domain Description: DUF4384 Location: 31 3838-31 4069 bp Feature: gene Location: 314350-316356 bp Ori: AFY99362.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 314536-315145 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 31 4536-31 51 45 bp Feature: domain Description: cas1 Location: 315361-316327 bp Feature: domain Description: cas1 Location: 31 5361 -31 6327 bp Feature: gene Location: 317686-318726 bp Ori: AFY99363.1 Feature: domain Description: Cas1_I-II-III Location: 317695-318622 bp Feature: domain Description: Cas1 _I-II-III Location: 31 7695-31 8622 bp Feature: gene Location: 318738-319016 bp Ori: AFY99364.1 Feature: domain Description: Cas2_I_II_III Location: 318747-318978 bp Feature: domain Description: Cas2_I_II_III Location: 31 8747-31 8978 bp Feature: gene Location: 3411570-3412844 bp Ori: AFZ01846.1 Feature: domain Description: GT4_sucrose_synthase Location: 3411594-3412779 bp Feature: domain Description: GT4_sucrose_synthase Location: 341 1 594-341 2779 bp Feature: gene Location: 3413227-3413724 bp Feature: gene Location: 3414607-3416181 bp Ori: AFZ01848.1 Feature: domain Description: RVT_N Location: 3414643-3414886 bp Feature: domain Description: RVT_N Location: 341 4643-341 4886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3414940-3415594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 4940-341 5594 bp Feature: domain Description: McrA Location: 3415828-3416149 bp Feature: domain Description: McrA Location: 341 5828-341 61 49 bp Feature: gene Location: 3417129-3418169 bp Ori: AFZ01849.1 Feature: domain Description: COG5592 Location: 3417501-3418065 bp Feature: domain Description: COG5592 Location: 341 7501 -341 8065 bp Feature: gene Location: 3418530-3419219 bp Ori: AFZ01850.1 Feature: domain Description: LplA Location: 3418542-3419067 bp Feature: domain Description: LplA Location: 341 8542-341 9067 bp Feature: gene Location: 3512510-3513850 bp Ori: AFZ01933.1 Feature: domain Description: ALP Location: 3512618-3513818 bp Feature: domain Description: ALP Location: 351 261 8-351 381 8 bp Feature: gene Location: 3513956-3515164 bp Ori: AFZ01934.1 Feature: domain Description: MltA Location: 3514112-3515159 bp Feature: domain Description: MltA Location: 351 41 1 2-351 51 59 bp Feature: gene Location: 3515382-3516956 bp Ori: AFZ01935.1 Feature: domain Description: RVT_N Location: 3515418-3515661 bp Feature: domain Description: RVT_N Location: 351 541 8-351 5661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3515715-3516369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 571 5-351 6369 bp Feature: domain Description: McrA Location: 3516603-3516924 bp Feature: domain Description: McrA Location: 351 6603-351 6924 bp Feature: gene Location: 3517493-3517807 bp Ori: AFZ01936.1 Feature: domain Description: COG4299 Location: 3517520-3517769 bp Feature: domain Description: COG4299 Location: 351 7520-351 7769 bp Feature: gene Location: 3518496-3518951 bp Ori: AFZ01937.1 Feature: domain Description: Fur Location: 3518514-3518934 bp Feature: domain Description: Fur Location: 351 851 4-351 8934 bp Feature: gene Location: 6713554-6714174 bp Ori: AFZ04460.1 Feature: domain Description: SLATT_5 Location: 6713578-6714160 bp Feature: domain Description: SLATT_5 Location: 671 3578-671 41 60 bp Feature: gene Location: 6714233-6714412 bp Feature: gene Location: 6714412-6715953 bp Ori: AFZ04462.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6714790-6715405 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 671 4790-671 5405 bp Feature: gene Location: 6716439-6719123 bp Ori: AFZ04463.1 Feature: domain Description: Dob10 Location: 6716466-6719112 bp Feature: domain Description: Dob1 0 Location: 671 6466-671 91 1 2 bp Feature: gene Location: 6719324-6720136 bp Ori: AFZ04464.1 Feature: domain Description: PRK11880 Location: 6719336-6720134 bp Feature: domain Description: PRK1 1 880 Location: 671 9336-67201 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287), Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), GT4_sucrose_synthase (cd03800)
RVT_N (pfam13655), RVT-GII, McrA (COG4058), COG5592 (Hemerythrin superfamily protein ), LplA (COG0095), ALP (pfam17527), MltA (smart00925), COG4299 (Predicted acyltransferase ), Fur (COG0735), SLATT_5 (pfam18160)
RVT-UG17, Dob10 (COG4581), PRK11880 (pyrroline-5-carboxylate reductase; Reviewed)