myRT

myRT report for GCA_000317475.1_ASM31747v1

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Seq: CP003614.1 Oscillatoria nigro-viridis PCC 7112, complete genome (7479014 bp)
Overview 1 RT 1: 140908-148085 bp 2 RT 2: 610537-619415 bp 3 RT 3: 755959-764385 bp 4 RT 4: 1370438-1377137 bp 5 RT 5: 1547497-1553988 bp 6 RT 6: 1950833-1956517 bp 7 RT 7: 2137478-2143924 bp 8 RT 8: 2744957-2749576 bp 9 RT 9: 3502731-3510192 bp 10 RT 10: 4425185-4429227 bp 11 RT 11: 4497341-4504309 bp 12 RT 12: 4788086-4800432 bp 13 RT 13: 5311324-5317175 bp 14 RT 14: 5537176-5541087 bp 15 RT 15: 5660576-5668987 bp 16 RT 16: 6019118-6023385 bp 17 RT 17: 6802507-6810681 bp 18 RT 18: 7291517-7296770 bp Neighborhood of RT #1 [140908, 148096] DUF4394 DUF4394 DUF4394 RVT_N RVT-GII GIIM HNH EamA EamA Neighborhood of RT #2 [610537, 619690] pfam14252 RVT_N RVT-GII GIIM HNH RRXRR HNHc pfam14252 HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind Neighborhood of RT #3 [755959, 764385] WD40 WD40 WD40 7WD40 Uma2 RVT_N RVT-GII GIIM McrA RAYT Neighborhood of RT #4 [1370438, 1377139] HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind RVT_N RVT-GII GIIM HNH COG3694 Neighborhood of RT #5 [1547497, 1554014] PRK05952 PRK05952 RVT_N RVT-GII GIIM HNHc InsQ PRK10402 BaeS Neighborhood of RT #6 [1950833, 1956531] RVT_N RVT-GII GIIM McrA HemolysinCabind HemolysinCabind HemolysinCabind DUF4394 DUF4394 Neighborhood of RT #7 [2137478, 2143941] Uma2 RVT_N RVT-GII GIIM HNH Uma2 Neighborhood of RT #8 [2744957, 2749581] RVT_N RVT-GII GIIM HNHc InsQ YraQ Neighborhood of RT #9 [3502731, 3510197] PAS BaeS RVT_N RVT-GII GIIM HNH PRK11091 COG1453 Neighborhood of RT #10 [4425185, 4429227] InsQ RVT_N RVT-GII GIIM HNHc Neighborhood of RT #11 [4497341, 4504404] SrmB RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 FrhB Neighborhood of RT #12 [4788086, 4800443] spore_SleB spore_SleB RVT_N RVT-GII YkfC HNHc STKc_PknB_like COG3899 BaeS NAGPA NAGPA Neighborhood of RT #13 [5311324, 5317177] RAYT RVT_N RVT-GII GIIM McrA prenyl_cyano Neighborhood of RT #14 [5537176, 5541087] InsQ RVT_N RVT-GII GIIM HNHc Neighborhood of RT #15 [5660576, 5668989] PRK00148 HemolysinCabind HemolysinCabind HemolysinCabind RVT_N RVT-GII GIIM McrA eno argC Neighborhood of RT #16 [6019118, 6023385] HicA_toxin HicB TPR RVT-Retrons Neighborhood of RT #17 [6802507, 6810752] VCBS FG-GAP VCBS Calx_beta Calx_beta HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind RVT_N RVT-GII GIIM HNH pfam14252 pfam14252 VCBS Dockerin_II VCBS VCBS Neighborhood of RT #18 [7291517, 7296770] RVT_N RVT-GII GIIM HNHc CheA Feature: gene Location: 140908-141357 bp Ori: AFZ04761.1 Feature: domain Description: DUF4394 Location: 140983-141064 bp Feature: domain Description: DUF4394 Location: 1 40983-1 41 064 bp Feature: domain Description: DUF4394 Location: 141088-141175 bp Feature: domain Description: DUF4394 Location: 1 41 088-1 41 1 75 bp Feature: domain Description: DUF4394 Location: 141196-141346 bp Feature: domain Description: DUF4394 Location: 1 41 1 96-1 41 346 bp Feature: gene Location: 141811-141924 bp Feature: gene Location: 142018-143835 bp Ori: AFZ04763.1 Feature: domain Description: RVT_N Location: 142051-142294 bp Feature: domain Description: RVT_N Location: 1 42051 -1 42294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142339-143035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42339-1 43035 bp Feature: domain Description: GIIM Note: maturase Location: 143137-143368 bp Feature: domain Description: GIIM Note: maturase Location: 1 431 37-1 43368 bp Feature: domain Description: HNH Note: nucleases Location: 143590-143725 bp Feature: domain Description: HNH Note: nucleases Location: 1 43590-1 43725 bp Feature: gene Location: 143868-146906 bp Feature: gene Location: 147221-148096 bp Ori: AFZ04765.1 Feature: domain Description: EamA Location: 147227-147626 bp Feature: domain Description: EamA Location: 1 47227-1 47626 bp Feature: domain Description: EamA Location: 147692-148085 bp Feature: domain Description: EamA Location: 1 47692-1 48085 bp Feature: gene Location: 610537-610710 bp Feature: gene Location: 610829-611233 bp Ori: AFZ05120.1 Feature: domain Description: pfam14252 Location: 610946-611153 bp Feature: domain Description: pfam1 4252 Location: 61 0946-61 1 1 53 bp Feature: gene Location: 612218-613930 bp Ori: AFZ05121.1 Feature: domain Description: RVT_N Location: 612272-612515 bp Feature: domain Description: RVT_N Location: 61 2272-61 251 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612566-613247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 2566-61 3247 bp Feature: domain Description: GIIM Note: maturase Location: 613316-613535 bp Feature: domain Description: GIIM Note: maturase Location: 61 331 6-61 3535 bp Feature: domain Description: HNH Note: nucleases Location: 613787-613919 bp Feature: domain Description: HNH Note: nucleases Location: 61 3787-61 391 9 bp Feature: gene Location: 613917-615173 bp Ori: AFZ05122.1 Feature: domain Description: RRXRR Location: 614031-614430 bp Feature: domain Description: RRXRR Location: 61 4031 -61 4430 bp Feature: domain Description: HNHc Note: nucleases Location: 614451-614598 bp Feature: domain Description: HNHc Note: nucleases Location: 61 4451 -61 4598 bp Feature: gene Location: 615965-619690 bp Ori: AFZ05123.1 Feature: domain Description: pfam14252 Location: 616085-616571 bp Feature: domain Description: pfam1 4252 Location: 61 6085-61 6571 bp Feature: domain Description: HemolysinCabind Location: 618839-618929 bp Feature: domain Description: HemolysinCabind Location: 61 8839-61 8929 bp Feature: domain Description: HemolysinCabind Location: 618932-619037 bp Feature: domain Description: HemolysinCabind Location: 61 8932-61 9037 bp Feature: domain Description: HemolysinCabind Location: 619043-619145 bp Feature: domain Description: HemolysinCabind Location: 61 9043-61 91 45 bp Feature: domain Description: HemolysinCabind Location: 619202-619307 bp Feature: domain Description: HemolysinCabind Location: 61 9202-61 9307 bp Feature: domain Description: HemolysinCabind Location: 619313-619415 bp Feature: domain Description: HemolysinCabind Location: 61 931 3-61 941 5 bp Feature: gene Location: 755959-758190 bp Ori: AFZ05241.1 Feature: domain Description: WD40 Location: 756130-757336 bp Feature: domain Description: WD40 Location: 7561 30-757336 bp Feature: domain Description: WD40 Location: 757399-757513 bp Feature: domain Description: WD40 Location: 757399-75751 3 bp Feature: domain Description: WD40 Location: 757522-757639 bp Feature: domain Description: WD40 Location: 757522-757639 bp Feature: domain Description: 7WD40 Location: 757666-758182 bp Feature: domain Description: 7WD40 Location: 757666-7581 82 bp Feature: gene Location: 758309-759004 bp Ori: AFZ05242.1 Feature: domain Description: Uma2 Location: 758354-758963 bp Feature: domain Description: Uma2 Location: 758354-758963 bp Feature: gene Location: 760840-762711 bp Ori: AFZ05243.1 Feature: domain Description: RVT_N Location: 760876-761122 bp Feature: domain Description: RVT_N Location: 760876-761 1 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761164-761848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761 1 64-761 848 bp Feature: domain Description: GIIM Note: maturase Location: 761950-762181 bp Feature: domain Description: GIIM Note: maturase Location: 761 950-7621 81 bp Feature: domain Description: McrA Location: 762271-762547 bp Feature: domain Description: McrA Location: 762271 -762547 bp Feature: gene Location: 763469-763867 bp Ori: AFZ05244.1 Feature: domain Description: RAYT Location: 763484-763862 bp Feature: domain Description: RAYT Location: 763484-763862 bp Feature: gene Location: 764104-764385 bp Feature: gene Location: 1370438-1372408 bp Ori: AFZ05720.1 Feature: domain Description: HemolysinCabind Location: 1370495-1370600 bp Feature: domain Description: HemolysinCabind Location: 1 370495-1 370600 bp Feature: domain Description: HemolysinCabind Location: 1370666-1370717 bp Feature: domain Description: HemolysinCabind Location: 1 370666-1 37071 7 bp Feature: domain Description: HemolysinCabind Location: 1370726-1370822 bp Feature: domain Description: HemolysinCabind Location: 1 370726-1 370822 bp Feature: domain Description: HemolysinCabind Location: 1370831-1370873 bp Feature: domain Description: HemolysinCabind Location: 1 370831 -1 370873 bp Feature: domain Description: HemolysinCabind Location: 1371707-1371812 bp Feature: domain Description: HemolysinCabind Location: 1 371 707-1 371 81 2 bp Feature: domain Description: HemolysinCabind Location: 1371842-1371947 bp Feature: domain Description: HemolysinCabind Location: 1 371 842-1 371 947 bp Feature: domain Description: HemolysinCabind Location: 1371977-1372070 bp Feature: domain Description: HemolysinCabind Location: 1 371 977-1 372070 bp Feature: domain Description: HemolysinCabind Location: 1372103-1372136 bp Feature: domain Description: HemolysinCabind Location: 1 3721 03-1 3721 36 bp Feature: gene Location: 1373051-1373164 bp Feature: gene Location: 1373258-1375075 bp Ori: AFZ05722.1 Feature: domain Description: RVT_N Location: 1373291-1373534 bp Feature: domain Description: RVT_N Location: 1 373291 -1 373534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373579-1374275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 373579-1 374275 bp Feature: domain Description: GIIM Note: maturase Location: 1374377-1374608 bp Feature: domain Description: GIIM Note: maturase Location: 1 374377-1 374608 bp Feature: domain Description: HNH Note: nucleases Location: 1374830-1374965 bp Feature: domain Description: HNH Note: nucleases Location: 1 374830-1 374965 bp Feature: gene Location: 1375075-1375272 bp Feature: gene Location: 1376345-1377139 bp Ori: AFZ05724.1 Feature: domain Description: COG3694 Location: 1376360-1377137 bp Feature: domain Description: COG3694 Location: 1 376360-1 3771 37 bp Feature: gene Location: 1547497-1548840 bp Ori: AFZ05856.1 Feature: domain Description: PRK05952 Location: 1547500-1547818 bp Feature: domain Description: PRK05952 Location: 1 547500-1 54781 8 bp Feature: domain Description: PRK05952 Location: 1548034-1548829 bp Feature: domain Description: PRK05952 Location: 1 548034-1 548829 bp Feature: gene Location: 1549145-1549399 bp Feature: gene Location: 1549686-1551386 bp Ori: AFZ05858.1 Feature: domain Description: RVT_N Location: 1549740-1549986 bp Feature: domain Description: RVT_N Location: 1 549740-1 549986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1550034-1550685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 550034-1 550685 bp Feature: domain Description: GIIM Note: maturase Location: 1550736-1550970 bp Feature: domain Description: GIIM Note: maturase Location: 1 550736-1 550970 bp Feature: domain Description: HNHc Note: nucleases Location: 1551207-1551354 bp Feature: domain Description: HNHc Note: nucleases Location: 1 551 207-1 551 354 bp Feature: gene Location: 1551392-1552510 bp Ori: AFZ05859.1 Feature: domain Description: InsQ Location: 1551536-1552460 bp Feature: domain Description: InsQ Location: 1 551 536-1 552460 bp Feature: gene Location: 1552905-1554014 bp Ori: AFZ05860.1 Feature: domain Description: PRK10402 Location: 1552962-1553187 bp Feature: domain Description: PRK1 0402 Location: 1 552962-1 5531 87 bp Feature: domain Description: BaeS Location: 1553190-1553988 bp Feature: domain Description: BaeS Location: 1 5531 90-1 553988 bp Feature: gene Location: 1950833-1952662 bp Ori: AFZ06170.1 Feature: domain Description: RVT_N Location: 1950875-1951121 bp Feature: domain Description: RVT_N Location: 1 950875-1 951 1 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1951163-1951847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 951 1 63-1 951 847 bp Feature: domain Description: GIIM Note: maturase Location: 1951949-1952183 bp Feature: domain Description: GIIM Note: maturase Location: 1 951 949-1 9521 83 bp Feature: domain Description: McrA Location: 1952276-1952552 bp Feature: domain Description: McrA Location: 1 952276-1 952552 bp Feature: gene Location: 1953918-1954205 bp Feature: gene Location: 1954369-1956531 bp Ori: AFZ06172.1 Feature: domain Description: HemolysinCabind Location: 1954387-1954489 bp Feature: domain Description: HemolysinCabind Location: 1 954387-1 954489 bp Feature: domain Description: HemolysinCabind Location: 1954492-1954597 bp Feature: domain Description: HemolysinCabind Location: 1 954492-1 954597 bp Feature: domain Description: HemolysinCabind Location: 1954603-1954702 bp Feature: domain Description: HemolysinCabind Location: 1 954603-1 954702 bp Feature: domain Description: DUF4394 Location: 1955035-1955749 bp Feature: domain Description: DUF4394 Location: 1 955035-1 955749 bp Feature: domain Description: DUF4394 Location: 1955803-1956517 bp Feature: domain Description: DUF4394 Location: 1 955803-1 95651 7 bp Feature: gene Location: 2137478-2137921 bp Feature: gene Location: 2138691-2139230 bp Ori: AFZ06334.1 Feature: domain Description: Uma2 Location: 2138730-2139213 bp Feature: domain Description: Uma2 Location: 21 38730-21 3921 3 bp Feature: gene Location: 2140298-2142115 bp Ori: AFZ06335.1 Feature: domain Description: RVT_N Location: 2140331-2140574 bp Feature: domain Description: RVT_N Location: 21 40331 -21 40574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2140619-2141315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4061 9-21 41 31 5 bp Feature: domain Description: GIIM Note: maturase Location: 2141417-2141648 bp Feature: domain Description: GIIM Note: maturase Location: 21 41 41 7-21 41 648 bp Feature: domain Description: HNH Note: nucleases Location: 2141870-2142005 bp Feature: domain Description: HNH Note: nucleases Location: 21 41 870-21 42005 bp Feature: gene Location: 2142209-2142322 bp Feature: gene Location: 2143396-2143941 bp Ori: AFZ06337.1 Feature: domain Description: Uma2 Location: 2143456-2143924 bp Feature: domain Description: Uma2 Location: 21 43456-21 43924 bp Feature: gene Location: 2744957-2745067 bp Feature: gene Location: 2745103-2745357 bp Feature: gene Location: 2745644-2747344 bp Ori: AFZ06800.1 Feature: domain Description: RVT_N Location: 2745698-2745944 bp Feature: domain Description: RVT_N Location: 2745698-2745944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2745992-2746643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2745992-2746643 bp Feature: domain Description: GIIM Note: maturase Location: 2746694-2746928 bp Feature: domain Description: GIIM Note: maturase Location: 2746694-2746928 bp Feature: domain Description: HNHc Note: nucleases Location: 2747165-2747312 bp Feature: domain Description: HNHc Note: nucleases Location: 27471 65-274731 2 bp Feature: gene Location: 2747350-2748468 bp Ori: AFZ06801.1 Feature: domain Description: InsQ Location: 2747476-2748430 bp Feature: domain Description: InsQ Location: 2747476-2748430 bp Feature: gene Location: 2748589-2749581 bp Ori: AFZ06802.1 Feature: domain Description: YraQ Location: 2748607-2749576 bp Feature: domain Description: YraQ Location: 2748607-2749576 bp Feature: gene Location: 3502731-3503921 bp Ori: AFZ07387.1 Feature: domain Description: PAS Location: 3502794-3503007 bp Feature: domain Description: PAS Location: 3502794-3503007 bp Feature: domain Description: BaeS Location: 3503091-3503901 bp Feature: domain Description: BaeS Location: 3503091 -3503901 bp Feature: gene Location: 3504402-3504515 bp Feature: gene Location: 3504609-3506426 bp Ori: AFZ07389.1 Feature: domain Description: RVT_N Location: 3504642-3504885 bp Feature: domain Description: RVT_N Location: 3504642-3504885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3504930-3505626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3504930-3505626 bp Feature: domain Description: GIIM Note: maturase Location: 3505728-3505959 bp Feature: domain Description: GIIM Note: maturase Location: 3505728-3505959 bp Feature: domain Description: HNH Note: nucleases Location: 3506181-3506316 bp Feature: domain Description: HNH Note: nucleases Location: 35061 81 -350631 6 bp Feature: gene Location: 3506519-3508522 bp Ori: AFZ07390.1 Feature: domain Description: PRK11091 Location: 3507959-3508436 bp Feature: domain Description: PRK1 1 091 Location: 3507959-3508436 bp Feature: gene Location: 3509067-3510197 bp Ori: AFZ07391.1 Feature: domain Description: COG1453 Location: 3509070-3510192 bp Feature: domain Description: COG1 453 Location: 3509070-351 01 92 bp Feature: gene Location: 4425185-4425607 bp Feature: gene Location: 4425647-4426834 bp Ori: AFZ08092.1 Feature: domain Description: InsQ Location: 4425719-4426745 bp Feature: domain Description: InsQ Location: 442571 9-4426745 bp Feature: gene Location: 4426840-4428540 bp Ori: AFZ08093.1 Feature: domain Description: RVT_N Location: 4426894-4427140 bp Feature: domain Description: RVT_N Location: 4426894-44271 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4427188-4427839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44271 88-4427839 bp Feature: domain Description: GIIM Note: maturase Location: 4427890-4428124 bp Feature: domain Description: GIIM Note: maturase Location: 4427890-44281 24 bp Feature: domain Description: HNHc Note: nucleases Location: 4428361-4428508 bp Feature: domain Description: HNHc Note: nucleases Location: 4428361 -4428508 bp Feature: gene Location: 4428827-4429081 bp Feature: gene Location: 4429117-4429227 bp Feature: gene Location: 4497341-4498825 bp Ori: AFZ08133.1 Feature: domain Description: SrmB Location: 4497353-4498553 bp Feature: domain Description: SrmB Location: 4497353-4498553 bp Feature: gene Location: 4499334-4499519 bp Feature: gene Location: 4499692-4500756 bp Ori: AFZ08135.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4499896-4500514 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4499896-450051 4 bp Feature: gene Location: 4501430-4503016 bp Ori: AFZ08136.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 4501511-4501661 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4501 51 1 -4501 661 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4501910-4502015 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4501 91 0-450201 5 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4502330-4502969 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4502330-4502969 bp Feature: gene Location: 4503202-4504404 bp Ori: AFZ08137.1 Feature: domain Description: FrhB Location: 4503262-4504309 bp Feature: domain Description: FrhB Location: 4503262-4504309 bp Feature: gene Location: 4788086-4788616 bp Ori: AFZ08385.1 Feature: domain Description: spore_SleB Location: 4788188-4788383 bp Feature: domain Description: spore_SleB Location: 47881 88-4788383 bp Feature: domain Description: spore_SleB Location: 4788407-4788599 bp Feature: domain Description: spore_SleB Location: 4788407-4788599 bp Feature: gene Location: 4789828-4789983 bp Feature: gene Location: 4789940-4791598 bp Ori: AFZ08387.1 Feature: domain Description: RVT_N Location: 4789991-4790231 bp Feature: domain Description: RVT_N Location: 4789991 -4790231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4790276-4790900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4790276-4790900 bp Feature: domain Description: YkfC Location: 4791122-4791203 bp Feature: domain Description: YkfC Location: 4791 1 22-4791 203 bp Feature: domain Description: HNHc Note: nucleases Location: 4791428-4791569 bp Feature: domain Description: HNHc Note: nucleases Location: 4791 428-4791 569 bp Feature: gene Location: 4792090-4797582 bp Ori: AFZ08388.1 Feature: domain Description: STKc_PknB_like Location: 4792120-4792927 bp Feature: domain Description: STKc_PknB_like Location: 47921 20-4792927 bp Feature: domain Description: COG3899 Location: 4793023-4795651 bp Feature: domain Description: COG3899 Location: 4793023-4795651 bp Feature: domain Description: BaeS Location: 4796611-4797580 bp Feature: domain Description: BaeS Location: 479661 1 -4797580 bp Feature: gene Location: 4797696-4800443 bp Ori: AFZ08389.1 Feature: domain Description: NAGPA Location: 4799607-4799772 bp Feature: domain Description: NAGPA Location: 4799607-4799772 bp Feature: domain Description: NAGPA Location: 4799898-4800432 bp Feature: domain Description: NAGPA Location: 4799898-4800432 bp Feature: gene Location: 5311324-5311722 bp Ori: AFZ08754.1 Feature: domain Description: RAYT Location: 5311336-5311717 bp Feature: domain Description: RAYT Location: 531 1 336-531 1 71 7 bp Feature: gene Location: 5312502-5314349 bp Ori: AFZ08755.1 Feature: domain Description: RVT_N Location: 5312514-5312760 bp Feature: domain Description: RVT_N Location: 531 251 4-531 2760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5312802-5313486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 2802-531 3486 bp Feature: domain Description: GIIM Note: maturase Location: 5313588-5313819 bp Feature: domain Description: GIIM Note: maturase Location: 531 3588-531 381 9 bp Feature: domain Description: McrA Location: 5313909-5314185 bp Feature: domain Description: McrA Location: 531 3909-531 41 85 bp Feature: gene Location: 5315644-5316108 bp Feature: gene Location: 5316206-5317177 bp Ori: AFZ08757.1 Feature: domain Description: prenyl_cyano Location: 5316212-5317175 bp Feature: domain Description: prenyl_cyano Location: 531 621 2-531 71 75 bp Feature: gene Location: 5537176-5537427 bp Feature: gene Location: 5537411-5538694 bp Ori: AFZ08911.1 Feature: domain Description: InsQ Location: 5537555-5538473 bp Feature: domain Description: InsQ Location: 5537555-5538473 bp Feature: gene Location: 5538700-5540400 bp Ori: AFZ08912.1 Feature: domain Description: RVT_N Location: 5538754-5539000 bp Feature: domain Description: RVT_N Location: 5538754-5539000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5539048-5539699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5539048-5539699 bp Feature: domain Description: GIIM Note: maturase Location: 5539750-5539984 bp Feature: domain Description: GIIM Note: maturase Location: 5539750-5539984 bp Feature: domain Description: HNHc Note: nucleases Location: 5540221-5540368 bp Feature: domain Description: HNHc Note: nucleases Location: 5540221 -5540368 bp Feature: gene Location: 5540687-5540941 bp Feature: gene Location: 5540977-5541087 bp Feature: gene Location: 5660576-5661226 bp Ori: AFZ09015.1 Feature: domain Description: PRK00148 Location: 5660591-5661221 bp Feature: domain Description: PRK001 48 Location: 5660591 -5661 221 bp Feature: gene Location: 5661407-5662321 bp Ori: AFZ09016.1 Feature: domain Description: HemolysinCabind Location: 5661605-5661686 bp Feature: domain Description: HemolysinCabind Location: 5661 605-5661 686 bp Feature: domain Description: HemolysinCabind Location: 5661692-5661791 bp Feature: domain Description: HemolysinCabind Location: 5661 692-5661 791 bp Feature: domain Description: HemolysinCabind Location: 5661854-5661929 bp Feature: domain Description: HemolysinCabind Location: 5661 854-5661 929 bp Feature: gene Location: 5663526-5665373 bp Ori: AFZ09017.1 Feature: domain Description: RVT_N Location: 5663538-5663784 bp Feature: domain Description: RVT_N Location: 5663538-5663784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5663826-5664510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5663826-566451 0 bp Feature: domain Description: GIIM Note: maturase Location: 5664612-5664843 bp Feature: domain Description: GIIM Note: maturase Location: 566461 2-5664843 bp Feature: domain Description: McrA Location: 5664933-5665209 bp Feature: domain Description: McrA Location: 5664933-5665209 bp Feature: gene Location: 5666452-5667732 bp Ori: AFZ09018.1 Feature: domain Description: eno Location: 5666464-5667712 bp Feature: domain Description: eno Location: 5666464-566771 2 bp Feature: gene Location: 5667931-5668989 bp Ori: AFZ09019.1 Feature: domain Description: argC Location: 5667952-5668987 bp Feature: domain Description: argC Location: 5667952-5668987 bp Feature: gene Location: 6019118-6019387 bp Ori: AFZ09299.1 Feature: domain Description: HicA_toxin Location: 6019181-6019328 bp Feature: domain Description: HicA_toxin Location: 601 91 81 -601 9328 bp Feature: gene Location: 6019359-6019724 bp Ori: AFZ09300.1 Feature: domain Description: HicB Location: 6019416-6019602 bp Feature: domain Description: HicB Location: 601 941 6-601 9602 bp Feature: gene Location: 6019770-6021641 bp Ori: AFZ09301.1 Feature: domain Description: TPR Location: 6019833-6020013 bp Feature: domain Description: TPR Location: 601 9833-602001 3 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6020466-6021087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6020466-6021 087 bp Feature: gene Location: 6022035-6022259 bp Feature: gene Location: 6022324-6023385 bp Feature: gene Location: 6802507-6803565 bp Feature: gene Location: 6803653-6806586 bp Ori: AFZ09907.1 Feature: domain Description: VCBS Location: 6803695-6803878 bp Feature: domain Description: VCBS Location: 6803695-6803878 bp Feature: domain Description: FG-GAP Location: 6803980-6804046 bp Feature: domain Description: FG-GAP Location: 6803980-6804046 bp Feature: domain Description: VCBS Location: 6804058-6804187 bp Feature: domain Description: VCBS Location: 6804058-68041 87 bp Feature: domain Description: Calx_beta Location: 6804235-6804517 bp Feature: domain Description: Calx_beta Location: 6804235-680451 7 bp Feature: domain Description: Calx_beta Location: 6804646-6804886 bp Feature: domain Description: Calx_beta Location: 6804646-6804886 bp Feature: domain Description: HemolysinCabind Location: 6805699-6805801 bp Feature: domain Description: HemolysinCabind Location: 6805699-6805801 bp Feature: domain Description: HemolysinCabind Location: 6805807-6805912 bp Feature: domain Description: HemolysinCabind Location: 6805807-680591 2 bp Feature: domain Description: HemolysinCabind Location: 6805915-6806017 bp Feature: domain Description: HemolysinCabind Location: 680591 5-680601 7 bp Feature: domain Description: HemolysinCabind Location: 6806026-6806128 bp Feature: domain Description: HemolysinCabind Location: 6806026-68061 28 bp Feature: domain Description: HemolysinCabind Location: 6806185-6806290 bp Feature: domain Description: HemolysinCabind Location: 68061 85-6806290 bp Feature: gene Location: 6806642-6808459 bp Ori: AFZ09908.1 Feature: domain Description: RVT_N Location: 6806675-6806918 bp Feature: domain Description: RVT_N Location: 6806675-680691 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6806963-6807659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6806963-6807659 bp Feature: domain Description: GIIM Note: maturase Location: 6807761-6807992 bp Feature: domain Description: GIIM Note: maturase Location: 6807761 -6807992 bp Feature: domain Description: HNH Note: nucleases Location: 6808214-6808349 bp Feature: domain Description: HNH Note: nucleases Location: 680821 4-6808349 bp Feature: gene Location: 6808553-6808666 bp Feature: gene Location: 6809049-6810752 bp Ori: AFZ09910.1 Feature: domain Description: pfam14252 Location: 6809088-6809394 bp Feature: domain Description: pfam1 4252 Location: 6809088-6809394 bp Feature: domain Description: pfam14252 Location: 6809940-6810117 bp Feature: domain Description: pfam1 4252 Location: 6809940-681 01 1 7 bp Feature: domain Description: VCBS Location: 6810129-6810219 bp Feature: domain Description: VCBS Location: 681 01 29-681 021 9 bp Feature: domain Description: Dockerin_II Location: 6810327-6810378 bp Feature: domain Description: Dockerin_II Location: 681 0327-681 0378 bp Feature: domain Description: VCBS Location: 6810402-6810540 bp Feature: domain Description: VCBS Location: 681 0402-681 0540 bp Feature: domain Description: VCBS Location: 6810588-6810681 bp Feature: domain Description: VCBS Location: 681 0588-681 0681 bp Feature: gene Location: 7291517-7291636 bp Feature: gene Location: 7291896-7292150 bp Feature: gene Location: 7292437-7294137 bp Ori: AFZ10284.1 Feature: domain Description: RVT_N Location: 7292491-7292737 bp Feature: domain Description: RVT_N Location: 7292491 -7292737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7292785-7293436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7292785-7293436 bp Feature: domain Description: GIIM Note: maturase Location: 7293487-7293721 bp Feature: domain Description: GIIM Note: maturase Location: 7293487-7293721 bp Feature: domain Description: HNHc Note: nucleases Location: 7293958-7294105 bp Feature: domain Description: HNHc Note: nucleases Location: 7293958-72941 05 bp Feature: gene Location: 7295375-7296433 bp Ori: AFZ10285.1 Feature: domain Description: CheA Location: 7295483-7296317 bp Feature: domain Description: CheA Location: 7295483-729631 7 bp Feature: gene Location: 7296516-7296770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4394 (pfam14339), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), EamA (pfam00892), pfam14252 (DUF4347;Domain of unknown function (DUF4347)), RRXRR (pfam14239), HNHc (smart00507), HemolysinCabind (pfam00353)
WD40 (smart00320), 7WD40 (sd00039), Uma2 (pfam05685), McrA (COG4058), RAYT (COG1943), COG3694 (ABC-type uncharacterized transport system, permease component ), PRK05952 (beta-ketoacyl-ACP synthase), InsQ (COG0675), PRK10402 (DNA-binding transcriptional activator YeiL; Provisional), BaeS (COG0642)
YraQ (COG0701), PAS (smart00091), PRK11091 (aerobic respiration control sensor protein ArcB; Provisional), COG1453 (Predicted oxidoreductase of the aldo/keto reductase family ), SrmB (COG0513), RVT-Retrons, SPFH_eoslipins_u2 (cd13438), FrhB (COG1035), spore_SleB (TIGR02869), YkfC (COG3344)
STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), NAGPA (pfam09992), prenyl_cyano (TIGR02749), PRK00148 (Maf-like protein; Reviewed), eno (TIGR01060), argC (TIGR01850), HicA_toxin (pfam07927), HicB (pfam05534), TPR (smart00028)
VCBS (pfam13517), FG-GAP (pfam01839), Calx_beta (smart00237), Dockerin_II (cd14254), CheA (COG0643)

Seq: CP003617.1 Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence (150927 bp)
Overview 1 RT 1: 12843-26870 bp 2 RT 2: 115549-123683 bp Neighborhood of RT #1 [12843, 26995] DUF4114 tand_rpt_95 Big_2 Big_2 RVT_N RVT-GII GIIM HNH Pentapeptide Pentapeptide Pentapeptide Pentapeptide YjbI Pentapeptide Pentapeptide Neighborhood of RT #2 [115549, 123706] NUC1 YjbI Pentapeptide RVT_N RVT-GII GIIM HNHc Phage_int_SAM_1 INT_C_like_5 arc_metj Feature: gene Location: 12843-21833 bp Ori: AFZ10850.1 Feature: domain Description: DUF4114 Location: 15375-15630 bp Feature: domain Description: DUF4114 Location: 15375-15630 bp Feature: domain Description: tand_rpt_95 Location: 15807-16020 bp Feature: domain Description: tand_rpt_95 Location: 15807-1602 0 bp Feature: domain Description: Big_2 Location: 16041-16218 bp Feature: domain Description: Big_2 Location: 16041-162 18 bp Feature: domain Description: Big_2 Location: 16359-16551 bp Feature: domain Description: Big_2 Location: 16359-16551 bp Feature: gene Location: 22223-22336 bp Feature: gene Location: 22450-24246 bp Ori: AFZ10852.1 Feature: domain Description: RVT_N Location: 22462-22705 bp Feature: domain Description: RVT_N Location: 2 2 462 -2 2 705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22750-23446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 750-2 3446 bp Feature: domain Description: GIIM Note: maturase Location: 23548-23779 bp Feature: domain Description: GIIM Note: maturase Location: 2 3548-2 3779 bp Feature: domain Description: HNH Note: nucleases Location: 24001-24136 bp Feature: domain Description: HNH Note: nucleases Location: 2 4001-2 4136 bp Feature: gene Location: 25247-26065 bp Ori: AFZ10853.1 Feature: domain Description: Pentapeptide Location: 25310-25424 bp Feature: domain Description: Pentapeptide Location: 2 5310-2 542 4 bp Feature: domain Description: Pentapeptide Location: 25517-25628 bp Feature: domain Description: Pentapeptide Location: 2 5517-2 562 8 bp Feature: domain Description: Pentapeptide Location: 25703-25799 bp Feature: domain Description: Pentapeptide Location: 2 5703-2 5799 bp Feature: domain Description: Pentapeptide Location: 25823-25919 bp Feature: domain Description: Pentapeptide Location: 2 582 3-2 5919 bp Feature: gene Location: 26198-26995 bp Ori: AFZ10854.1 Feature: domain Description: YjbI Location: 26246-26585 bp Feature: domain Description: YjbI Location: 2 62 46-2 6585 bp Feature: domain Description: Pentapeptide Location: 26651-26753 bp Feature: domain Description: Pentapeptide Location: 2 6651-2 6753 bp Feature: domain Description: Pentapeptide Location: 26774-26870 bp Feature: domain Description: Pentapeptide Location: 2 6774-2 6870 bp Feature: gene Location: 115549-117618 bp Ori: AFZ10912.1 Feature: domain Description: NUC1 Location: 116698-117595 bp Feature: domain Description: NUC1 Location: 116698-117595 bp Feature: gene Location: 117764-118714 bp Ori: AFZ10913.1 Feature: domain Description: YjbI Location: 117836-118361 bp Feature: domain Description: YjbI Location: 117836-118361 bp Feature: domain Description: Pentapeptide Location: 118508-118583 bp Feature: domain Description: Pentapeptide Location: 118508-118583 bp Feature: gene Location: 119747-121570 bp Ori: AFZ10914.1 Feature: domain Description: RVT_N Location: 119807-120053 bp Feature: domain Description: RVT_N Location: 119807-12 0053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120095-120767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0095-12 0767 bp Feature: domain Description: GIIM Note: maturase Location: 120866-121100 bp Feature: domain Description: GIIM Note: maturase Location: 12 0866-12 1100 bp Feature: domain Description: HNHc Note: nucleases Location: 121298-121457 bp Feature: domain Description: HNHc Note: nucleases Location: 12 12 98-12 1457 bp Feature: gene Location: 121891-122901 bp Ori: AFZ10915.1 Feature: domain Description: Phage_int_SAM_1 Location: 122026-122248 bp Feature: domain Description: Phage_int_SAM_1 Location: 12 2 02 6-12 2 2 48 bp Feature: domain Description: INT_C_like_5 Location: 122353-122854 bp Feature: domain Description: INT_C_like_5 Location: 12 2 353-12 2 854 bp Feature: gene Location: 123461-123706 bp Ori: AFZ10916.1 Feature: domain Description: arc_metj Location: 123566-123683 bp Feature: domain Description: arc_metj Location: 12 3566-12 3683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4114 (pfam13448), tand_rpt_95 (NF012211), Big_2 (pfam02368), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Pentapeptide (pfam00805), YjbI (COG2346), NUC1 (COG1864)
HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_C_like_5 (cd01195), arc_metj (LOAD_arc_metj)

Seq: CP003616.1 Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence (260268 bp)
Overview 1 RT 1: 96932-109536 bp 2 RT 2: 212983-220578 bp Neighborhood of RT #1 [96932, 109536] YprA RVT_N RVT-GII GIIM HNH RRXRR McrA RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [212983, 220578] HNH_3 RVT_N RVT-GII YkfC HNHc RVT_N RVT-GII McrA IbpA Feature: gene Location: 96932-97534 bp Feature: gene Location: 98058-100682 bp Ori: AFZ10704.1 Feature: domain Description: YprA Location: 98205-100662 bp Feature: domain Description: YprA Location: 98205-100662 bp Feature: gene Location: 101881-103593 bp Ori: AFZ10705.1 Feature: domain Description: RVT_N Location: 101935-102178 bp Feature: domain Description: RVT_N Location: 10193 5-102178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102229-102910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102229-102910 bp Feature: domain Description: GIIM Note: maturase Location: 102979-103198 bp Feature: domain Description: GIIM Note: maturase Location: 102979-103 198 bp Feature: domain Description: HNH Note: nucleases Location: 103450-103582 bp Feature: domain Description: HNH Note: nucleases Location: 103 450-103 582 bp Feature: gene Location: 103580-104854 bp Ori: AFZ10706.1 Feature: domain Description: RRXRR Location: 103742-104114 bp Feature: domain Description: RRXRR Location: 103 742-104114 bp Feature: domain Description: McrA Location: 104150-104393 bp Feature: domain Description: McrA Location: 104150-1043 93 bp Feature: gene Location: 104902-105723 bp Feature: gene Location: 106332-108044 bp Ori: AFZ10708.1 Feature: domain Description: RVT_N Location: 106374-106620 bp Feature: domain Description: RVT_N Location: 1063 74-106620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106662-107331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106662-1073 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 107430-107655 bp Feature: domain Description: GIIM Note: maturase Location: 10743 0-107655 bp Feature: domain Description: HNH Note: nucleases Location: 107865-108000 bp Feature: domain Description: HNH Note: nucleases Location: 107865-108000 bp Feature: gene Location: 108189-108527 bp Feature: gene Location: 108535-109536 bp Feature: gene Location: 212983-213339 bp Ori: AFZ10802.1 Feature: domain Description: HNH_3 Location: 213151-213214 bp Feature: domain Description: HNH_3 Location: 213 151-213 214 bp Feature: gene Location: 215251-215406 bp Feature: gene Location: 215363-217021 bp Ori: AFZ10804.1 Feature: domain Description: RVT_N Location: 215414-215654 bp Feature: domain Description: RVT_N Location: 215414-215654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215699-216323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215699-2163 23 bp Feature: domain Description: YkfC Location: 216545-216626 bp Feature: domain Description: YkfC Location: 216545-216626 bp Feature: domain Description: HNHc Note: nucleases Location: 216851-216992 bp Feature: domain Description: HNHc Note: nucleases Location: 216851-216992 bp Feature: gene Location: 217038-218723 bp Ori: AFZ10805.1 Feature: domain Description: RVT_N Location: 217182-217428 bp Feature: domain Description: RVT_N Location: 217182-217428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217479-218073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217479-218073 bp Feature: domain Description: McrA Location: 218304-218658 bp Feature: domain Description: McrA Location: 2183 04-218658 bp Feature: gene Location: 219668-220150 bp Ori: AFZ10806.1 Feature: domain Description: IbpA Location: 219698-220094 bp Feature: domain Description: IbpA Location: 219698-220094 bp Feature: gene Location: 220381-220578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YprA (COG1205), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RRXRR (pfam14239), McrA (COG4058), HNH_3 (pfam13392), YkfC (COG3344), HNHc (smart00507)
IbpA (COG0071)