myRT

myRT report for GCA_000317495.1_ASM31749v1

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Seq: CP003624.1 Crinalium epipsammum PCC 9333 plasmid pCRI9333.04, complete sequence (44285 bp)
Overview 1 RT 1: 75-6172 bp Neighborhood of RT #1 [75, 6360] PHD1_MTF2_PHF19_like HNHc RVT_N RVT-GII GIIM McrA ParAB_family PqqD Feature: gene Location: 75-656 bp Feature: gene Location: 705-986 bp Ori: AFZ15626.1 Feature: domain Description: PHD1_MTF2_PHF19_like Location: 762-798 bp Feature: domain Description: PHD1 _MTF2_PHF1 9_like Location: 762-798 bp Feature: domain Description: HNHc Note: nucleases Location: 864-942 bp Feature: domain Description: HNHc Note: nucleases Location: 864-942 bp Feature: gene Location: 2691-4445 bp Ori: AFZ15627.1 Feature: domain Description: RVT_N Location: 2721-2829 bp Feature: domain Description: RVT_N Location: 2721 -2829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871-3543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871 -3543 bp Feature: domain Description: GIIM Note: maturase Location: 3642-3873 bp Feature: domain Description: GIIM Note: maturase Location: 3642-3873 bp Feature: domain Description: McrA Location: 3963-4236 bp Feature: domain Description: McrA Location: 3963-4236 bp Feature: gene Location: 5246-5518 bp Ori: AFZ15628.1 Feature: domain Description: ParAB_family Location: 5261-5474 bp Feature: domain Description: ParAB_family Location: 5261 -5474 bp Feature: gene Location: 5908-6360 bp Ori: AFZ15629.1 Feature: domain Description: PqqD Location: 5974-6172 bp Feature: domain Description: PqqD Location: 5974-61 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHD1_MTF2_PHF19_like (cd15499), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), ParAB_family (cd02042), PqqD (pfam05402)

Seq: CP003620.1 Crinalium epipsammum PCC 9333, complete genome (5315554 bp)
Overview 1 RT 1: 694654-700429 bp 2 RT 2: 1770980-1776165 bp 3 RT 3: 2486354-2493389 bp 4 RT 4: 2877101-2885050 bp 5 RT 5: 3232168-3239126 bp 6 RT 6: 3512229-3518848 bp 7 RT 7: 3838539-3846449 bp 8 RT 8: 4818989-4825784 bp 9 RT 9: 5003828-5009932 bp Neighborhood of RT #1 [694654, 700464] PulE PIN_LabA RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [1770980, 1776173] COG2361 COG1669 RVT_N RVT-GII RVT-GII GIIM McrA Carot_N Neighborhood of RT #3 [2486354, 2493406] YdiL RVT_N RVT-GII RVT-GII GIIM McrA PhoE PhoE PRK07369 Neighborhood of RT #4 [2877101, 2885079] RVT_N RVT_N RVT-GII GIIM McrA MviM Neighborhood of RT #5 [3232168, 3239128] RVT_N RVT-GII GIIM McrA Uma2 EPS_sugtrans Neighborhood of RT #6 [3512229, 3518913] MrnC SpoU RVT_N RVT-GII GIIM McrA RRXRR DUF1816 Neighborhood of RT #7 [3838539, 3846460] GT_2_like_a STKc_PknB_like RVT_N RVT-GII GIIM McrA DUF3285 PRK00016 Neighborhood of RT #8 [4818989, 4825819] YcjU RVT_N RVT-GII GIIM McrA PHP_HisPPase_AMP GlpG Neighborhood of RT #9 [5003828, 5009932] PRK09284 RVT_N RVT-GII RVT-GII McrA DUF2726 Feature: gene Location: 694654-696300 bp Ori: AFZ11547.1 Feature: domain Description: PulE Location: 695020-696262 bp Feature: domain Description: PulE Location: 69502 0-6962 62 bp Feature: gene Location: 696498-697634 bp Ori: AFZ11548.1 Feature: domain Description: PIN_LabA Location: 697116-697560 bp Feature: domain Description: PIN_LabA Location: 697116-697560 bp Feature: gene Location: 698003-699046 bp Ori: AFZ11549.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 698264-698870 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6982 64-698870 bp Feature: gene Location: 699099-700103 bp Ori: AFZ11550.1 Feature: domain Description: Cas1_I-II-III Location: 699108-700065 bp Feature: domain Description: Cas1_I-II-III Location: 699108-700065 bp Feature: gene Location: 700192-700464 bp Ori: AFZ11551.1 Feature: domain Description: Cas2_I_II_III Location: 700198-700429 bp Feature: domain Description: Cas2 _I_II_III Location: 700198-70042 9 bp Feature: gene Location: 1770980-1771255 bp Ori: AFZ12456.1 Feature: domain Description: COG2361 Location: 1770995-1771253 bp Feature: domain Description: COG2 361 Location: 1770995-17712 53 bp Feature: gene Location: 1771242-1771544 bp Ori: AFZ12457.1 Feature: domain Description: COG1669 Location: 1771275-1771527 bp Feature: domain Description: COG1669 Location: 17712 75-177152 7 bp Feature: gene Location: 1772814-1774391 bp Ori: AFZ12458.1 Feature: domain Description: RVT_N Location: 1772850-1773096 bp Feature: domain Description: RVT_N Location: 1772 850-1773096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773147-1773573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773147-1773573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773576-1773741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773576-1773741 bp Feature: domain Description: GIIM Note: maturase Location: 1773798-1773969 bp Feature: domain Description: GIIM Note: maturase Location: 1773798-1773969 bp Feature: domain Description: McrA Location: 1773996-1774323 bp Feature: domain Description: McrA Location: 1773996-177432 3 bp Feature: gene Location: 1774480-1774842 bp Feature: gene Location: 1775715-1776173 bp Ori: AFZ12460.1 Feature: domain Description: Carot_N Location: 1775730-1776165 bp Feature: domain Description: Carot_N Location: 1775730-1776165 bp Feature: gene Location: 2486354-2487976 bp Ori: AFZ13063.1 Feature: domain Description: YdiL Location: 2487296-2487962 bp Feature: domain Description: YdiL Location: 2 4872 96-2 487962 bp Feature: gene Location: 2488137-2488499 bp Feature: gene Location: 2488588-2490165 bp Ori: AFZ13065.1 Feature: domain Description: RVT_N Location: 2488624-2488870 bp Feature: domain Description: RVT_N Location: 2 48862 4-2 488870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2488921-2489347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 48892 1-2 489347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2489350-2489515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 489350-2 489515 bp Feature: domain Description: GIIM Note: maturase Location: 2489572-2489743 bp Feature: domain Description: GIIM Note: maturase Location: 2 489572 -2 489743 bp Feature: domain Description: McrA Location: 2489770-2490097 bp Feature: domain Description: McrA Location: 2 489770-2 490097 bp Feature: gene Location: 2490514-2491866 bp Ori: AFZ13066.1 Feature: domain Description: PhoE Location: 2490532-2491123 bp Feature: domain Description: PhoE Location: 2 490532 -2 49112 3 bp Feature: domain Description: PhoE Location: 2491216-2491810 bp Feature: domain Description: PhoE Location: 2 4912 16-2 491810 bp Feature: gene Location: 2492060-2493406 bp Ori: AFZ13067.1 Feature: domain Description: PRK07369 Location: 2492066-2493389 bp Feature: domain Description: PRK07369 Location: 2 492 066-2 493389 bp Feature: gene Location: 2877101-2877436 bp Feature: gene Location: 2878750-2878989 bp Ori: AFZ13422.1 Feature: domain Description: RVT_N Location: 2878789-2878963 bp Feature: domain Description: RVT_N Location: 2 878789-2 878963 bp Feature: gene Location: 2879847-2881517 bp Ori: AFZ13423.1 Feature: domain Description: RVT_N Location: 2879877-2879985 bp Feature: domain Description: RVT_N Location: 2 879877-2 879985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880027-2880723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 88002 7-2 88072 3 bp Feature: domain Description: GIIM Note: maturase Location: 2880825-2881056 bp Feature: domain Description: GIIM Note: maturase Location: 2 88082 5-2 881056 bp Feature: domain Description: McrA Location: 2881146-2881419 bp Feature: domain Description: McrA Location: 2 881146-2 881419 bp Feature: gene Location: 2883290-2883829 bp Feature: gene Location: 2883967-2885079 bp Ori: AFZ13425.1 Feature: domain Description: MviM Location: 2883982-2885050 bp Feature: domain Description: MviM Location: 2 883982 -2 885050 bp Feature: gene Location: 3232168-3232530 bp Feature: gene Location: 3234490-3236481 bp Ori: AFZ13736.1 Feature: domain Description: RVT_N Location: 3234535-3234781 bp Feature: domain Description: RVT_N Location: 32 34535-32 34781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3234823-3235522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 3482 3-32 3552 2 bp Feature: domain Description: GIIM Note: maturase Location: 3235633-3235858 bp Feature: domain Description: GIIM Note: maturase Location: 32 35633-32 35858 bp Feature: domain Description: McrA Location: 3235963-3236245 bp Feature: domain Description: McrA Location: 32 35963-32 362 45 bp Feature: gene Location: 3236596-3237042 bp Ori: AFZ13737.1 Feature: domain Description: Uma2 Location: 3236689-3237037 bp Feature: domain Description: Uma2 Location: 32 36689-32 37037 bp Feature: gene Location: 3237695-3239128 bp Ori: AFZ13738.1 Feature: domain Description: EPS_sugtrans Location: 3237803-3239126 bp Feature: domain Description: EPS_sugtrans Location: 32 37803-32 3912 6 bp Feature: gene Location: 3512229-3512723 bp Ori: AFZ13973.1 Feature: domain Description: MrnC Location: 3512340-3512682 bp Feature: domain Description: MrnC Location: 3512 340-3512 682 bp Feature: gene Location: 3512720-3514300 bp Ori: AFZ13974.1 Feature: domain Description: SpoU Location: 3513497-3514235 bp Feature: domain Description: SpoU Location: 3513497-35142 35 bp Feature: gene Location: 3515178-3517169 bp Ori: AFZ13975.1 Feature: domain Description: RVT_N Location: 3515223-3515469 bp Feature: domain Description: RVT_N Location: 35152 2 3-3515469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3515511-3516210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3515511-35162 10 bp Feature: domain Description: GIIM Note: maturase Location: 3516321-3516546 bp Feature: domain Description: GIIM Note: maturase Location: 351632 1-3516546 bp Feature: domain Description: McrA Location: 3516651-3516933 bp Feature: domain Description: McrA Location: 3516651-3516933 bp Feature: gene Location: 3517467-3518561 bp Ori: AFZ13976.1 Feature: domain Description: RRXRR Location: 3517479-3518001 bp Feature: domain Description: RRXRR Location: 3517479-3518001 bp Feature: gene Location: 3518623-3518913 bp Ori: AFZ13977.1 Feature: domain Description: DUF1816 Location: 3518659-3518848 bp Feature: domain Description: DUF1816 Location: 3518659-3518848 bp Feature: gene Location: 3838539-3839270 bp Ori: AFZ14255.1 Feature: domain Description: GT_2_like_a Location: 3838551-3839256 bp Feature: domain Description: GT_2 _like_a Location: 3838551-38392 56 bp Feature: gene Location: 3839346-3841058 bp Ori: AFZ14256.1 Feature: domain Description: STKc_PknB_like Location: 3839463-3840237 bp Feature: domain Description: STKc_PknB_like Location: 3839463-38402 37 bp Feature: gene Location: 3841921-3843912 bp Ori: AFZ14257.1 Feature: domain Description: RVT_N Location: 3841966-3842212 bp Feature: domain Description: RVT_N Location: 3841966-3842 2 12 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3842254-3842953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3842 2 54-3842 953 bp Feature: domain Description: GIIM Note: maturase Location: 3843064-3843289 bp Feature: domain Description: GIIM Note: maturase Location: 3843064-38432 89 bp Feature: domain Description: McrA Location: 3843394-3843676 bp Feature: domain Description: McrA Location: 3843394-3843676 bp Feature: gene Location: 3845684-3845899 bp Ori: AFZ14258.1 Feature: domain Description: DUF3285 Location: 3845768-3845897 bp Feature: domain Description: DUF32 85 Location: 3845768-3845897 bp Feature: gene Location: 3845930-3846460 bp Ori: AFZ14259.1 Feature: domain Description: PRK00016 Location: 3846020-3846449 bp Feature: domain Description: PRK00016 Location: 384602 0-3846449 bp Feature: gene Location: 4818989-4819693 bp Ori: AFZ15060.1 Feature: domain Description: YcjU Location: 4818998-4819667 bp Feature: domain Description: YcjU Location: 4818998-4819667 bp Feature: gene Location: 4820042-4820731 bp Feature: gene Location: 4821338-4823215 bp Ori: AFZ15062.1 Feature: domain Description: RVT_N Location: 4821377-4821623 bp Feature: domain Description: RVT_N Location: 482 1377-482 162 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4821665-4822349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 1665-482 2 349 bp Feature: domain Description: GIIM Note: maturase Location: 4822451-4822682 bp Feature: domain Description: GIIM Note: maturase Location: 482 2 451-482 2 682 bp Feature: domain Description: McrA Location: 4822775-4823045 bp Feature: domain Description: McrA Location: 482 2 775-482 3045 bp Feature: gene Location: 4823922-4824740 bp Ori: AFZ15063.1 Feature: domain Description: PHP_HisPPase_AMP Location: 4823931-4824645 bp Feature: domain Description: PHP_HisPPase_AMP Location: 482 3931-482 4645 bp Feature: gene Location: 4825106-4825819 bp Ori: AFZ15064.1 Feature: domain Description: GlpG Location: 4825115-4825784 bp Feature: domain Description: GlpG Location: 482 5115-482 5784 bp Feature: gene Location: 5003828-5004799 bp Feature: gene Location: 5005031-5006404 bp Ori: AFZ15224.1 Feature: domain Description: PRK09284 Location: 5005061-5006354 bp Feature: domain Description: PRK092 84 Location: 5005061-5006354 bp Feature: gene Location: 5007099-5008676 bp Ori: AFZ15225.1 Feature: domain Description: RVT_N Location: 5007135-5007381 bp Feature: domain Description: RVT_N Location: 5007135-5007381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007432-5007858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007432 -5007858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007858-5008026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007858-500802 6 bp Feature: domain Description: McrA Location: 5008278-5008608 bp Feature: domain Description: McrA Location: 50082 78-5008608 bp Feature: gene Location: 5008746-5009222 bp Ori: AFZ15226.1 Feature: domain Description: DUF2726 Location: 5008764-5009076 bp Feature: domain Description: DUF2 72 6 Location: 5008764-5009076 bp Feature: gene Location: 5009225-5009932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulE (COG2804), PIN_LabA (cd10911), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), COG2361 (Uncharacterized conserved protein, contains HEPN domain ), COG1669 (Predicted nucleotidyltransferase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
McrA (COG4058), Carot_N (pfam09150), YdiL (COG1266), PhoE (COG0406), PRK07369 (dihydroorotase; Provisional), MviM (COG0673), Uma2 (pfam05685), EPS_sugtrans (TIGR03025), MrnC (COG1939), SpoU (COG0566)
RRXRR (pfam14239), DUF1816 (pfam08846), GT_2_like_a (cd02522), STKc_PknB_like (cd14014), DUF3285 (pfam11688), PRK00016 (metal-binding heat shock protein; Provisional), YcjU (COG0637), PHP_HisPPase_AMP (cd07438), GlpG (COG0705), PRK09284 (thiamine biosynthesis protein ThiC; Provisional)
DUF2726 (pfam10881)