myRT

myRT report for GCA_000317515.1_ASM31751v1

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Seq: CP003633.1 Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence (92471 bp)
Overview 1 RT 1: 3541-13272 bp Neighborhood of RT #1 [3541, 13310] BcsQ BcsQ HTH_XRE pfam13191 RVT-CRISPR Cas1_I-II-III Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 3541-4134 bp Ori: AFZ22156.1 Feature: domain Description: BcsQ Location: 3544-3676 bp Feature: domain Description: BcsQ Location: 3544-3676 bp Feature: domain Description: BcsQ Location: 3730-4069 bp Feature: domain Description: BcsQ Location: 3730-4069 bp Feature: gene Location: 4301-7915 bp Ori: AFZ22157.1 Feature: domain Description: HTH_XRE Location: 4343-4511 bp Feature: domain Description: HTH_XRE Location: 4343-451 1 bp Feature: domain Description: pfam13191 Location: 4661-4955 bp Feature: domain Description: pfam1 31 91 Location: 4661 -4955 bp Feature: gene Location: 8790-10793 bp Ori: AFZ22158.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8979-9588 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8979-9588 bp Feature: domain Description: Cas1_I-II-III Location: 9798-10755 bp Feature: domain Description: Cas1 _I-II-III Location: 9798-1 0755 bp Feature: gene Location: 11988-12989 bp Ori: AFZ22159.1 Feature: domain Description: Cas1_I-II-III Location: 11994-12951 bp Feature: domain Description: Cas1 _I-II-III Location: 1 1 994-1 2951 bp Feature: gene Location: 13029-13310 bp Ori: AFZ22160.1 Feature: domain Description: Cas2_I_II_III Location: 13041-13272 bp Feature: domain Description: Cas2_I_II_III Location: 1 3041 -1 3272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), HTH_XRE (smart00530), pfam13191 (AAA_16;AAA ATPase domain), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: CP003630.1 Microcoleus sp. PCC 7113, complete genome (7470429 bp)
Overview 1 RT 1: 719594-722700 bp 2 RT 2: 889637-901994 bp 3 RT 3: 3796376-3806120 bp Neighborhood of RT #1 [719594, 722723] MazF DUF2281 RVT-AbiA Phd HTH_XRE Neighborhood of RT #2 [889637, 902017] TPR TPR YjeQ_EngC TPR TPR TPR TPR TPR TPR alaS RVT_N RVT-GII GIIM HNHc HMA PleD Neighborhood of RT #3 [3796376, 3806120] TIR_2 TIR_2 TIR_2 CHASE2 YjbI Pentapeptide Pentapeptide YjbI RVT_N RVT-GII YkfC HNHc RVT_N RVT-GII InsQ Feature: gene Location: 719594-719965 bp Ori: AFZ16536.1 Feature: domain Description: MazF Location: 719630-719954 bp Feature: domain Description: MazF Location: 719630-719954 bp Feature: gene Location: 719959-720189 bp Ori: AFZ16537.1 Feature: domain Description: DUF2281 Location: 719983-720067 bp Feature: domain Description: DUF2 2 81 Location: 719983-72 0067 bp Feature: gene Location: 720194-722122 bp Ori: AFZ16538.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 720653-721181 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 72 0653-72 1181 bp Feature: gene Location: 722139-722378 bp Ori: AFZ16539.1 Feature: domain Description: Phd Location: 722154-722358 bp Feature: domain Description: Phd Location: 72 2 154-72 2 358 bp Feature: gene Location: 722502-722723 bp Ori: AFZ16540.1 Feature: domain Description: HTH_XRE Location: 722535-722700 bp Feature: domain Description: HTH_XRE Location: 72 2 535-72 2 700 bp Feature: gene Location: 889637-894157 bp Ori: AFZ16688.1 Feature: domain Description: TPR Location: 890297-890627 bp Feature: domain Description: TPR Location: 8902 97-89062 7 bp Feature: domain Description: TPR Location: 890675-890966 bp Feature: domain Description: TPR Location: 890675-890966 bp Feature: domain Description: YjeQ_EngC Location: 891113-891230 bp Feature: domain Description: YjeQ_EngC Location: 891113-8912 30 bp Feature: domain Description: TPR Location: 892499-892748 bp Feature: domain Description: TPR Location: 892 499-892 748 bp Feature: domain Description: TPR Location: 892775-893054 bp Feature: domain Description: TPR Location: 892 775-893054 bp Feature: domain Description: TPR Location: 893096-893171 bp Feature: domain Description: TPR Location: 893096-893171 bp Feature: domain Description: TPR Location: 893180-893273 bp Feature: domain Description: TPR Location: 893180-8932 73 bp Feature: domain Description: TPR Location: 893282-893564 bp Feature: domain Description: TPR Location: 8932 82 -893564 bp Feature: domain Description: TPR Location: 893612-893891 bp Feature: domain Description: TPR Location: 893612 -893891 bp Feature: gene Location: 894364-897021 bp Ori: AFZ16689.1 Feature: domain Description: alaS Location: 894394-897007 bp Feature: domain Description: alaS Location: 894394-897007 bp Feature: gene Location: 897281-899077 bp Ori: AFZ16690.1 Feature: domain Description: RVT_N Location: 897368-897614 bp Feature: domain Description: RVT_N Location: 897368-897614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897656-898292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897656-8982 92 bp Feature: domain Description: GIIM Note: maturase Location: 898424-898658 bp Feature: domain Description: GIIM Note: maturase Location: 89842 4-898658 bp Feature: domain Description: HNHc Note: nucleases Location: 898850-899012 bp Feature: domain Description: HNHc Note: nucleases Location: 898850-899012 bp Feature: gene Location: 900405-900608 bp Ori: AFZ16691.1 Feature: domain Description: HMA Location: 900429-900597 bp Feature: domain Description: HMA Location: 90042 9-900597 bp Feature: gene Location: 901046-902017 bp Ori: AFZ16692.1 Feature: domain Description: PleD Location: 901100-901994 bp Feature: domain Description: PleD Location: 901100-901994 bp Feature: gene Location: 3796376-3799555 bp Ori: AFZ19043.1 Feature: domain Description: TIR_2 Location: 3796430-3796691 bp Feature: domain Description: TIR_2 Location: 3796430-3796691 bp Feature: domain Description: TIR_2 Location: 3797120-3797465 bp Feature: domain Description: TIR_2 Location: 379712 0-3797465 bp Feature: domain Description: TIR_2 Location: 3797726-3798083 bp Feature: domain Description: TIR_2 Location: 379772 6-3798083 bp Feature: domain Description: CHASE2 Location: 3798308-3799526 bp Feature: domain Description: CHASE2 Location: 3798308-379952 6 bp Feature: gene Location: 3799745-3801487 bp Ori: AFZ19044.1 Feature: domain Description: YjbI Location: 3799790-3800141 bp Feature: domain Description: YjbI Location: 3799790-3800141 bp Feature: domain Description: Pentapeptide Location: 3800165-3800276 bp Feature: domain Description: Pentapeptide Location: 3800165-38002 76 bp Feature: domain Description: Pentapeptide Location: 3800276-3800384 bp Feature: domain Description: Pentapeptide Location: 38002 76-3800384 bp Feature: domain Description: YjbI Location: 3800432-3800933 bp Feature: domain Description: YjbI Location: 3800432 -3800933 bp Feature: gene Location: 3801860-3803677 bp Ori: AFZ19045.1 Feature: domain Description: RVT_N Location: 3801890-3802136 bp Feature: domain Description: RVT_N Location: 3801890-3802 136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3802178-3802874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3802 178-3802 874 bp Feature: domain Description: YkfC Location: 3803039-3803237 bp Feature: domain Description: YkfC Location: 3803039-38032 37 bp Feature: domain Description: HNHc Note: nucleases Location: 3803402-3803552 bp Feature: domain Description: HNHc Note: nucleases Location: 3803402 -3803552 bp Feature: gene Location: 3803741-3804340 bp Ori: AFZ19046.1 Feature: domain Description: RVT_N Location: 3803795-3804041 bp Feature: domain Description: RVT_N Location: 3803795-3804041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804089-3804338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804089-3804338 bp Feature: gene Location: 3804768-3805883 bp Ori: AFZ19047.1 Feature: domain Description: InsQ Location: 3804912-3805809 bp Feature: domain Description: InsQ Location: 3804912 -3805809 bp Feature: gene Location: 3805902-3806120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazF (COG2337), DUF2281 (pfam10047), RVT-AbiA, Phd (COG4118), HTH_XRE (smart00530), TPR (smart00028), YjeQ_EngC (cd01854), alaS (TIGR00344), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), HNHc (smart00507), HMA (pfam00403), PleD (COG3706), TIR_2 (pfam13676), CHASE2 (smart01080), YjbI (COG2346), Pentapeptide (pfam00805), YkfC (COG3344), InsQ (COG0675)