myRT

myRT report for GCA_000321415.2_ASM32141v2

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Seq: CP003989.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome (4002350 bp)
Overview 1 RT 1: 1072861-1076228 bp 2 RT 2: 2375855-2384616 bp 3 RT 3: 3636418-3644271 bp Neighborhood of RT #1 [1072861, 1076228] RVT-GII MhpC Neighborhood of RT #2 [2375855, 2384616] DUF4338 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT-GII GIIM DUF262 COG3472 Neighborhood of RT #3 [3636418, 3644271] PhoX TauE RVT-GII GIIM INT_RitC_C_like Feature: gene Location: 1072861-1074129 bp Ori: AGA32808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072918-1073587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07291 8-1 073587 bp Feature: gene Location: 1075292-1076005 bp Ori: AGA32809.1 Feature: domain Description: MhpC Location: 1075325-1075988 bp Feature: domain Description: MhpC Location: 1 075325-1 075988 bp Feature: gene Location: 1076079-1076228 bp Feature: gene Location: 2375855-2378170 bp Ori: AGA33964.1 Feature: domain Description: DUF4338 Location: 2376158-2376713 bp Feature: domain Description: DUF4338 Location: 23761 58-237671 3 bp Feature: domain Description: Tnp_DNA_bind Location: 2376782-2376950 bp Feature: domain Description: Tnp_DNA_bind Location: 2376782-2376950 bp Feature: domain Description: DDE_Tnp_1 Location: 2377319-2377883 bp Feature: domain Description: DDE_Tnp_1 Location: 237731 9-2377883 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2377883-2378153 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2377883-23781 53 bp Feature: gene Location: 2379652-2380317 bp Feature: gene Location: 2380327-2381574 bp Ori: AGA33966.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380519-2381137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238051 9-2381 1 37 bp Feature: domain Description: GIIM Note: maturase Location: 2381182-2381377 bp Feature: domain Description: GIIM Note: maturase Location: 2381 1 82-2381 377 bp Feature: gene Location: 2382332-2384107 bp Ori: AGA33967.1 Feature: domain Description: DUF262 Location: 2382356-2383082 bp Feature: domain Description: DUF262 Location: 2382356-2383082 bp Feature: domain Description: COG3472 Location: 2383673-2384015 bp Feature: domain Description: COG3472 Location: 2383673-238401 5 bp Feature: gene Location: 2384272-2384616 bp Feature: gene Location: 3636418-3638547 bp Ori: AGA35143.1 Feature: domain Description: PhoX Location: 3636478-3638542 bp Feature: domain Description: PhoX Location: 3636478-3638542 bp Feature: gene Location: 3638737-3639378 bp Ori: AGA35144.1 Feature: domain Description: TauE Location: 3638746-3639355 bp Feature: domain Description: TauE Location: 3638746-3639355 bp Feature: gene Location: 3640765-3641718 bp Ori: AGA35145.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3640768-3641233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3640768-3641 233 bp Feature: domain Description: GIIM Note: maturase Location: 3641290-3641518 bp Feature: domain Description: GIIM Note: maturase Location: 3641 290-3641 51 8 bp Feature: gene Location: 3642175-3642375 bp Ori: AGA35146.1 Feature: domain Description: INT_RitC_C_like Location: 3642178-3642301 bp Feature: domain Description: INT_RitC_C_like Location: 36421 78-3642301 bp Feature: gene Location: 3644017-3644271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MhpC (COG0596), DUF4338 (pfam14236), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), GIIM (pfam08388), DUF262 (pfam03235), COG3472 (Uncharacterized protein ), PhoX (COG3211)
TauE (pfam01925), INT_RitC_C_like (cd01182)