myRT

myRT report for GCA_000325705.1_ASM32570v1

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Seq: CP003346.1 Echinicola vietnamensis DSM 17526, complete genome (5608040 bp)
Overview 1 RT 1: 1176390-1180920 bp 2 RT 2: 2543526-2558024 bp 3 RT 3: 4843032-4849956 bp Neighborhood of RT #1 [1176390, 1180952] DUF772 DDE_Tnp_1_2 RVT-GII GIIM MscS Neighborhood of RT #2 [2543526, 2558068] SusD RVT-GII GIIM IG DUF11 DUF11 CHU_C T9SS_PorP_fam Neighborhood of RT #3 [4843032, 4850045] PRK09277 YafD RVT-GII GIIM MlaD Feature: gene Location: 1176390-1177925 bp Ori: AGA77284.1 Feature: domain Description: DUF772 Location: 1176585-1176780 bp Feature: domain Description: DUF772 Location: 1 1 76585-1 1 76780 bp Feature: domain Description: DDE_Tnp_1_2 Location: 1177512-1177764 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 1 1 7751 2-1 1 77764 bp Feature: gene Location: 1178022-1178180 bp Feature: gene Location: 1178207-1179655 bp Ori: AGA77286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178567-1179182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 78567-1 1 791 82 bp Feature: domain Description: GIIM Note: maturase Location: 1179230-1179431 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 79230-1 1 79431 bp Feature: gene Location: 1179652-1179807 bp Feature: gene Location: 1180104-1180952 bp Ori: AGA77288.1 Feature: domain Description: MscS Location: 1180128-1180920 bp Feature: domain Description: MscS Location: 1 1 801 28-1 1 80920 bp Feature: gene Location: 2543526-2545160 bp Ori: AGA78398.1 Feature: domain Description: SusD Location: 2543646-2545014 bp Feature: domain Description: SusD Location: 2543646-254501 4 bp Feature: gene Location: 2545465-2545620 bp Feature: gene Location: 2545617-2547065 bp Ori: AGA78400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545977-2546592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545977-2546592 bp Feature: domain Description: GIIM Note: maturase Location: 2546640-2546841 bp Feature: domain Description: GIIM Note: maturase Location: 2546640-2546841 bp Feature: gene Location: 2547550-2557092 bp Ori: AGA78401.1 Feature: domain Description: IG Location: 2551453-2551606 bp Feature: domain Description: IG Location: 2551 453-2551 606 bp Feature: domain Description: DUF11 Location: 2556115-2556352 bp Feature: domain Description: DUF1 1 Location: 25561 1 5-2556352 bp Feature: domain Description: DUF11 Location: 2556478-2556748 bp Feature: domain Description: DUF1 1 Location: 2556478-2556748 bp Feature: domain Description: CHU_C Location: 2556832-2557084 bp Feature: domain Description: CHU_C Location: 2556832-2557084 bp Feature: gene Location: 2557100-2558068 bp Ori: AGA78402.1 Feature: domain Description: T9SS_PorP_fam Location: 2557115-2558024 bp Feature: domain Description: T9SS_PorP_fam Location: 25571 1 5-2558024 bp Feature: gene Location: 4843032-4845809 bp Ori: AGA80246.1 Feature: domain Description: PRK09277 Location: 4843047-4845801 bp Feature: domain Description: PRK09277 Location: 4843047-4845801 bp Feature: gene Location: 4845973-4847019 bp Ori: AGA80247.1 Feature: domain Description: YafD Location: 4845997-4846921 bp Feature: domain Description: YafD Location: 4845997-4846921 bp Feature: gene Location: 4847146-4848594 bp Ori: AGA80248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4847506-4848121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4847506-48481 21 bp Feature: domain Description: GIIM Note: maturase Location: 4848169-4848370 bp Feature: domain Description: GIIM Note: maturase Location: 48481 69-4848370 bp Feature: gene Location: 4848591-4848746 bp Feature: gene Location: 4849047-4850045 bp Ori: AGA80250.1 Feature: domain Description: MlaD Location: 4849062-4849956 bp Feature: domain Description: MlaD Location: 4849062-4849956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1_2 (pfam13586), RVT-GII, GIIM (pfam08388), MscS (COG0668), SusD (NF033071), IG (smart00409), DUF11 (pfam01345), CHU_C (pfam13585), T9SS_PorP_fam (TIGR03519)
PRK09277 (aconitate hydratase AcnA), YafD (COG3021), MlaD (pfam02470)